Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_B02
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 60 1e-09
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 60 1e-09
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071... 43 2e-04
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 40 0.002
02_02_0456 + 10489544-10491064,10491506-10491632,10491633-10492606 29 2.4
04_04_0466 + 25433678-25434007,25434118-25434176,25434345-254344... 29 4.2
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 28 5.6
01_01_0972 + 7672048-7672390,7672546-7672709,7672864-7672961,767... 28 5.6
05_05_0163 + 22842955-22844371,22845519-22845592,22845913-22845948 28 7.4
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 60.5 bits (140), Expect = 1e-09
Identities = 48/148 (32%), Positives = 68/148 (45%)
Frame = +1
Query: 202 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 381
H + + +L PNVR+R+ LR +Q + +IE KF+ E A R IVN
Sbjct: 47 HTDVLEALSPNVRKRVEYLREIQGQHDEIELKFFEERAALEAKYQKLYEPLYTKRYNIVN 106
Query: 382 GTYEPNDDECLNPWRDDTEXEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPXFWY 561
G E ++ D+ A +NAA EG+ D + KG+P FW
Sbjct: 107 GVVE------VDGGNDEP-------ASENAA--EGK------------DADAKGVPDFWL 139
Query: 562 NIFRNVSMLXEMMQEHDEPILKCLQDIK 645
+ +L E +QE DEP LK L+DIK
Sbjct: 140 TAMKTNEVLSEEIQERDEPALKYLKDIK 167
>05_06_0234 -
26602660-26602728,26602814-26602988,26603077-26603120,
26603204-26603381,26603468-26603652,26603737-26603801,
26603985-26604066,26604342-26604434,26605096-26605191,
26605312-26605355,26605467-26605530
Length = 364
Score = 60.5 bits (140), Expect = 1e-09
Identities = 48/148 (32%), Positives = 65/148 (43%)
Frame = +1
Query: 202 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 381
H + + SL P VR+R+ LR +Q + D+EAKF+ E A R IVN
Sbjct: 46 HTDVLESLEPKVRKRVEVLREIQSQHDDLEAKFFEERAALEAKYQKMYEPLYSKRYEIVN 105
Query: 382 GTYEPNDDECLNPWRDDTEXEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPXFWY 561
G E D +E A T E+K++ KG+P FW
Sbjct: 106 GVVEV-----------DGVTKEAADE------TPAEQKEE------------KGVPEFWL 136
Query: 562 NIFRNVSMLXEMMQEHDEPILKCLQDIK 645
N +N +L E +QE DE LK L+DIK
Sbjct: 137 NAMKNHEILSEEIQERDEEALKYLKDIK 164
>06_03_0740 -
24006485-24006629,24006821-24006864,24006954-24007122,
24007226-24007413,24007572-24007634,24007992-24008084,
24009837-24009932,24010024-24010067,24010184-24010357,
24010764-24010974
Length = 408
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +1
Query: 520 PMDPNVKGIPXFWYNIFRNVSMLXEMMQEHDEPILKCLQDIK 645
P+ KG+P FW N +N +L E + E DE LK L+DIK
Sbjct: 202 PLYSKEKGVPDFWLNAMKNNEILAEEIHESDEEALKYLKDIK 243
Score = 35.5 bits (78), Expect = 0.037
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 202 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSE 309
H + + SL P+VR+R+ L +Q + ++E KF+ E
Sbjct: 153 HVDVLESLAPSVRKRVDVLMEIQSQHDELEVKFFEE 188
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +1
Query: 538 KGIPXFWYNIFRNVSMLXEMMQEHDEPILKCLQDIK 645
KG+P FW +N +L E + E DE LK L+DIK
Sbjct: 103 KGVPDFWLKAMKNNEILAEEIHESDEEALKYLKDIK 138
Score = 37.1 bits (82), Expect = 0.012
Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 12/154 (7%)
Frame = +1
Query: 202 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 381
H + + SL P VR+R+ L +Q + ++EAKF E A R+ IV+
Sbjct: 29 HVDVLESLAPVVRKRVDVLIEIQSQHDELEAKFLEEKAALEANYQKLYGPLYSKRSEIVS 88
Query: 382 GTYEPNDDECLNPWRDDTEXEELARAVQNAAITEGEEKKDDKAIEPPMD------PNVKG 543
G E + E L N + E + D++A++ D + KG
Sbjct: 89 GVLEV-EGETEEREEKGVPDFWLKAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKG 147
Query: 544 IP-XFWYN---IFRN--VSMLXEMMQEHDEPILK 627
F+++ F+N ++ M+ E DEPIL+
Sbjct: 148 FKFEFFFDTNPFFKNQVLTKTYHMIDEDDEPILE 181
>02_02_0456 + 10489544-10491064,10491506-10491632,10491633-10492606
Length = 873
Score = 29.5 bits (63), Expect = 2.4
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Frame = +1
Query: 70 VTTTHPKWS-LQKKKKSSEVVN*RNTX--LKSGVTRN-EMIAAITNRLHAEAMASLPPNV 237
++T H +WS Q++K E++ +++ L+ + N ++I R+H +A+L PN+
Sbjct: 27 LSTLHSRWSGKQQQKLQGELLQLQSSLQRLRDTLPANYDLIDRAEWRIHKHCVANLLPNI 86
Query: 238 RRRIRALRTLQKEFVDIEAKFYSEVHA 318
+ + L EF E K E +A
Sbjct: 87 KDAVYNADDLLDEFRWYEQKVALESNA 113
>04_04_0466 +
25433678-25434007,25434118-25434176,25434345-25434426,
25435024-25435122,25435750-25435831,25436759-25436823,
25437241-25438308,25438369-25438446,25438550-25438596,
25438734-25438779,25438871-25438950,25439050-25439166,
25439842-25439923,25440156-25440281,25440415-25440489,
25440743-25440868,25441542-25441646
Length = 888
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -3
Query: 309 FTVKLGLNVDKLLLKSSQGADSPTNIRG*GCHRFCMKAICDGRYHFIT 166
FT + L+ + LL ++ A+ T + G C++++CDG H +T
Sbjct: 177 FTFNISLSRENLLQVAAWDANLVTPHKRMGNAGLCLESLCDGSNHNVT 224
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +1
Query: 376 VNGTYEPNDDECLNPWRDDTEXEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPXF 555
VN + +DE + ++D E E+ Q + E+K DDK ++ +D V+ I F
Sbjct: 1951 VNLDQQQKEDEEIEKQKEDEEIEK-----QKEELQTDEQKHDDKRVDFIIDTQVESIDAF 2005
Query: 556 WYNIFRNV--SMLXEMMQEHD 612
+V ML + + +H+
Sbjct: 2006 QAEQTDSVVTEMLNDEVTQHE 2026
>01_01_0972 +
7672048-7672390,7672546-7672709,7672864-7672961,
7673040-7673361,7674021-7675220
Length = 708
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 219 CHRFCMKA-ICDGRYHFITGHATFQXGVALVHH 124
C +F ++ I + R HF+ G A Q V L HH
Sbjct: 673 CMKFLSRSQIQEVRQHFVLGAADIQPAVTLTHH 705
>05_05_0163 + 22842955-22844371,22845519-22845592,22845913-22845948
Length = 508
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = -3
Query: 432 VITPWVETFIIIRFICAIHNKSSLFIKRLVKFFIFAFECMYFTVKLGLNVD 280
V+ PW+++F I + +H+K +L K +K A + + +K G+ +D
Sbjct: 459 VLPPWLDSFPIPNAVLCLHSKINLSGKNNMKNETLA-DILVINIKTGILMD 508
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,922,260
Number of Sequences: 37544
Number of extensions: 293926
Number of successful extensions: 717
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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