Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_B02
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical pr...    69   2e-12
L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine re...    27   8.7  

>U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical
           protein D2096.8 protein.
          Length = 316

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 45/145 (31%), Positives = 66/145 (45%)
 Frame = +1

Query: 208 EAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGT 387
           + + +LP NV++R+ AL+ LQ + + IE+ FY  VH                R  IV G 
Sbjct: 17  DMIQALPLNVKQRVCALKNLQMKTIQIESDFYKRVHELEIEFEGKFKSTFDQRKAIVAGE 76

Query: 388 YEPNDDECLNPWRDDTEXEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPXFWYNI 567
            EP  ++   P  +  E ++LA                 KA E   DP+ KGI  FW   
Sbjct: 77  VEPTKEQIDTPILEGLEGDQLAELY--------------KAAE--ADPSAKGIKDFWLTA 120

Query: 568 FRNVSMLXEMMQEHDEPILKCLQDI 642
            R   ++ E ++EHD PIL  L D+
Sbjct: 121 LRTHDLVAEAIEEHDVPILSYLTDV 145


>L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical
           protein ZK1236.1 protein.
          Length = 645

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 321 ECMYFTVKLGLNVDKLLLKSSQGADSPTNI 232
           EC++ + K GLNVDK+L        +PT I
Sbjct: 188 ECLHISAKSGLNVDKVLEAIIDRVPAPTAI 217


>Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical
           protein T14D7.2 protein.
          Length = 734

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = -3

Query: 444 FXFSVITPWVETFIIIRFICAIHNKSSLFIKRLVKFFI---FAFECMYFTVKLGLNVDKL 274
           + F +I P V T++++ F    + +  LFI   V+  I   FA  C   +    LN+++L
Sbjct: 648 YLFHMI-PVVLTYMLVPFPIYFNTQIPLFIHCFVQLLITYFFAIICTMVSELPALNIERL 706

Query: 273 LLKS 262
           LL S
Sbjct: 707 LLAS 710


>AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein100 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 87  RMCGRHQNVRXVPIFNISLSP 25
           ++C ++QN   VP F+++LSP
Sbjct: 179 QVCAQYQNTNNVPKFSVALSP 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,525,874
Number of Sequences: 27780
Number of extensions: 253858
Number of successful extensions: 793
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)