Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_B01
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...   112   3e-26
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    27   2.9  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   6.7  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    25   8.9  

>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score =  112 bits (270), Expect = 3e-26
 Identities = 65/163 (39%), Positives = 103/163 (63%), Gaps = 3/163 (1%)
 Frame = +2

Query: 125 IKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKXXAFSLAEAKFTTG- 301
           +K RL GA  GH LLK+K++AL+ RFR I+  I + K  MG VM+  AFS+AE  F  G 
Sbjct: 19  MKTRLKGAQTGHSLLKRKSEALKKRFREIVVNIEQAKQKMGRVMQIAAFSMAEVGFAMGN 78

Query: 302 DFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGS-DTYELAGLARGGQQLAKLKK 478
           + N  + Q+V + ++++RSK++N++GV LP FE   D S D ++L GL +GGQQ+ K ++
Sbjct: 79  NINFEIQQSVKQPRLRVRSKQENISGVFLPTFEMNLDESIDDFQLTGLGKGGQQIQKARQ 138

Query: 479 NFQSAVKLLGRV-SVTADFICHSRPGY*DHE*TCHAIEHVIIP 604
            ++ AV+ L ++ S  + F+         +    ++IEH+IIP
Sbjct: 139 VYEKAVETLVQLASYQSAFVLLGDVLQMTNR-RVNSIEHIIIP 180



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +3

Query: 453 GSSLQSSRRTSRAL*SFWVELASLQTSFVTLDQVIKITNRRVTPLST*SFPR 608
           G  +Q +R+         V+LAS Q++FV L  V+++TNRRV  +     PR
Sbjct: 130 GQQIQKARQVYEKAVETLVQLASYQSAFVLLGDVLQMTNRRVNSIEHIIIPR 181


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 428 ELAGLARGGQQLAKLKKNFQSAVKLLGRVSVTADFICHS 544
           +L  L+R  ++LAK+      ++ L+G VS   +F+ HS
Sbjct: 301 DLGDLSR--EELAKILSQIPGSMGLIGNVSGVGNFVLHS 337


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +3

Query: 324  KMLPRLKSRLGPR---RTMLLVSPSQSLSHTRMVLIPMSWLV 440
            K +  L  RL PR   R M + SPS S + +  ++IP+S LV
Sbjct: 1222 KQMEALPERLRPRVKQRFMKIRSPSVSSATSVALMIPISTLV 1263


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 326 NVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAKLKK 478
           N+ K  + I SK        + +F ++QD  + Y +  LAR G+ L  + K
Sbjct: 145 NIEKEALCILSKHPGF----IKLFYTFQDAHNLYFVLSLARNGELLDYINK 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,773
Number of Sequences: 5004
Number of extensions: 46959
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)