Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_B01
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1340 + 32766773-32767582 119 2e-27
07_03_1198 + 24734985-24735169,24737897-24737975,24738070-247381... 33 0.24
11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,361... 29 4.0
06_03_1309 + 29223197-29223240,29223358-29223592,29223695-292237... 29 4.0
02_05_0430 - 28923784-28923830,28923931-28924341,28924552-289249... 29 4.0
07_03_0525 - 19044978-19045508 28 5.2
01_06_0111 + 26552513-26553361 28 5.2
03_02_1012 + 13207907-13207990,13209196-13209280,13209402-132101... 27 9.2
01_06_1276 - 35918954-35919106,35919220-35919325,35919477-359195... 27 9.2
01_04_0088 + 15930755-15931174,15931262-15931321 27 9.2
>04_04_1340 + 32766773-32767582
Length = 269
Score = 119 bits (286), Expect = 2e-27
Identities = 65/137 (47%), Positives = 88/137 (64%), Gaps = 9/137 (6%)
Frame = +2
Query: 122 LIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKXXAFSLAEAKFTTG 301
++K RL GA +GH LLKKK+DAL V+FR IL KI+ K MGE M+ +FSLAEAK+ G
Sbjct: 19 VMKARLVGATRGHALLKKKSDALTVQFRAILKKIVAAKESMGEAMRASSFSLAEAKYVAG 78
Query: 302 D-FNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQD--------GSDTYELAGLARGG 454
D VVLQ+V A +++RS ++NVAGV LP F + D + + L GLARGG
Sbjct: 79 DGVRHVVLQSVRSASLRVRSHQENVAGVKLPKFTHFVDPAAGSAGPSNASPSLTGLARGG 138
Query: 455 QQLAKLKKNFQSAVKLL 505
QQ+A + A+++L
Sbjct: 139 QQVAACRAAHVKAIEVL 155
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/34 (67%), Positives = 25/34 (73%)
Frame = +3
Query: 507 VELASLQTSFVTLDQVIKITNRRVTPLST*SFPR 608
VELASLQTSF+TLD+ IK TNRRV L PR
Sbjct: 156 VELASLQTSFLTLDEAIKTTNRRVNALENVVKPR 189
>07_03_1198 +
24734985-24735169,24737897-24737975,24738070-24738134,
24738214-24738313,24738429-24738470,24739062-24739100,
24739140-24739330,24739745-24739850
Length = 268
Score = 32.7 bits (71), Expect = 0.24
Identities = 20/70 (28%), Positives = 38/70 (54%)
Frame = +2
Query: 158 HGLLKKKADALQVRFRMILSKIIETKTLMGEVMKXXAFSLAEAKFTTGDFNQVVLQNVTK 337
+G+LK K DALQ R +L + ++T T+ E+ + K NQ++ +++++
Sbjct: 95 YGILKSKLDALQKSQRQLLGEQLDTLTIK-ELQQLEHQLEYSLKHIRSKKNQLLFESISE 153
Query: 338 AQIKIRSKKD 367
Q K +S K+
Sbjct: 154 LQKKEKSLKN 163
>11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,
3611984-3612217,3614113-3614138,3614446-3614633,
3615707-3617670,3617938-3618423,3618527-3618894
Length = 2207
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 568 FVILITWSRVTNEVCSDANSTQKL 497
FV+L+ +S V+ +CSD N T +L
Sbjct: 1294 FVLLLVFSTVSVVICSDGNETDRL 1317
>06_03_1309 +
29223197-29223240,29223358-29223592,29223695-29223783,
29223870-29223968,29224065-29224158,29224297-29224514,
29224861-29224967,29225298-29225472,29225596-29225743,
29226548-29226596,29228016-29228162,29229990-29229996,
29230417-29230482,29230773-29231991,29232073-29233149,
29233226-29233355,29233519-29233617,29233817-29233878,
29234429-29234533
Length = 1389
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = -3
Query: 433 QLIGIRTILV*LKDWEGDTSNIVLLGPNLDLSLGNIL*HNLVEVSSCELSFSQRESXXFH 254
++IGIR + L DW GD S + +L L++ ++L+ V + E+ R S +H
Sbjct: 404 EVIGIRNSIAILSDWPGDWSGLEKF-HDLPLNMQAFEIYHLIHV-TFEICTEMRISSPYH 461
Query: 253 Y 251
+
Sbjct: 462 F 462
>02_05_0430 -
28923784-28923830,28923931-28924341,28924552-28924963,
28925000-28925542,28925790-28925884,28926003-28927033,
28927304-28927452,28927483-28927523,28927594-28928206
Length = 1113
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 278 AEAKF-TTGDFNQVVLQNVTKAQIKIRSKKD 367
AE+KF G N ++QN+T+ ++ ++ KKD
Sbjct: 25 AESKFGEEGVTNDAIMQNLTQTELLVKEKKD 55
>07_03_0525 - 19044978-19045508
Length = 176
Score = 28.3 bits (60), Expect = 5.2
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = +2
Query: 137 LAGAVKGHGLLKKKADALQVRFRM--ILSKIIETKTLMG-EVMKXXAFSLA 280
LAGA G G +KK+A ++VR R+ I+S I T L +V+K F +A
Sbjct: 110 LAGAGAGDGPVKKRAVRVRVRDRVGKIMSSISRTIHLTSRDVVKHSGFRVA 160
>01_06_0111 + 26552513-26553361
Length = 282
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 531 KSAVTLTRPKSFTALWKFFLSFASCCPPRAKPANS 427
K +VT+ S T FFLS + PP ++PANS
Sbjct: 19 KESVTVASGSSTTNCCCFFLSRRTSEPPPSRPANS 53
>03_02_1012 + 13207907-13207990,13209196-13209280,13209402-13210186,
13210262-13210462,13210580-13210690,13211105-13211487,
13211594-13211702,13211786-13211866,13212088-13212156,
13212379-13212467,13212619-13212780,13212859-13212916,
13213143-13213373,13213516-13213662,13213779-13214333,
13214562-13214819,13215096-13215203,13215760-13215854,
13215946-13216102,13216466-13216666,13217542-13217670,
13218292-13218567
Length = 1457
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 171 LRRPWPFTAPARRPLINIWAXPR 103
LR + F PAR P IN+W R
Sbjct: 1036 LRSTYAFIPPARAPPINVWCADR 1058
>01_06_1276 -
35918954-35919106,35919220-35919325,35919477-35919574,
35919693-35919757,35919877-35920033,35920177-35920268,
35920379-35920493,35920574-35920622,35920705-35920858,
35920993-35921019,35921530-35921707,35922326-35922685,
35922979-35922987,35923170-35923238
Length = 543
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = -1
Query: 189 RASAFF---LRRPWPFTAPARRPLINIWAXPRREN 94
RA +F LR WP A +R L +W PR +N
Sbjct: 460 RAEKYFRRGLRLDWPEGAASRESLKAVWKLPRLQN 494
>01_04_0088 + 15930755-15931174,15931262-15931321
Length = 159
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 238 GFSLNDFAQDHTEPHLKGISLLLEETMAFHCT 143
G + DF H +PH LL ++ +F CT
Sbjct: 103 GLTAGDFILGHAKPHKSWKKLLYKDEQSFVCT 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,283,769
Number of Sequences: 37544
Number of extensions: 320534
Number of successful extensions: 626
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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