Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_B01
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27080-1|CAA81600.1|  257|Caenorhabditis elegans Hypothetical pr...   184   3e-47
Z99279-3|CAB16495.1|  298|Caenorhabditis elegans Hypothetical pr...    32   0.29 
AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical ...    29   2.7  

>Z27080-1|CAA81600.1|  257|Caenorhabditis elegans Hypothetical
           protein F55H2.2 protein.
          Length = 257

 Score =  184 bits (449), Expect = 3e-47
 Identities = 92/164 (56%), Positives = 115/164 (70%)
 Frame = +2

Query: 113 AQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKXXAFSLAEAKF 292
           AQ L+K RL GA KGH LLKKKADAL +RFR IL KI+E K LMGEVMK  AFSLAEAKF
Sbjct: 17  AQTLMKTRLKGAQKGHSLLKKKADALNLRFRDILRKIVENKVLMGEVMKEAAFSLAEAKF 76

Query: 293 TTGDFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLAKL 472
           T GDF+  V+QNV++AQ ++R KK+NV GV LP+F++YQDG D Y+L GL +GG  +A+L
Sbjct: 77  TAGDFSHTVIQNVSQAQYRVRMKKENVVGVFLPVFDAYQDGPDAYDLTGLGKGGANIARL 136

Query: 473 KKNFQSAVKLLGRVSVTADFICHSRPGY*DHE*TCHAIEHVIIP 604
           KKN+  A++LL  ++                    +AIEHVIIP
Sbjct: 137 KKNYNKAIELLVELATLQTCFITLDEAIKVTNRRVNAIEHVIIP 180



 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 20/34 (58%), Positives = 25/34 (73%)
 Frame = +3

Query: 507 VELASLQTSFVTLDQVIKITNRRVTPLST*SFPR 608
           VELA+LQT F+TLD+ IK+TNRRV  +     PR
Sbjct: 148 VELATLQTCFITLDEAIKVTNRRVNAIEHVIIPR 181


>Z99279-3|CAB16495.1|  298|Caenorhabditis elegans Hypothetical
           protein Y57G11A.3 protein.
          Length = 298

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = +2

Query: 335 KAQIKIRSKKDNVAGVTLPIFES---YQDGSDTYELAGLARGGQQLAKLKKNFQS 490
           K  IKI  +  ++  +   +FE+    +D +   ELA L  G Q+L K+KK+F++
Sbjct: 21  KKPIKIEGRSGDLKQLKSALFENKGPVKDEAREEELAALKAGNQELKKMKKDFET 75


>AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical
            protein Y46G5A.1a protein.
          Length = 1085

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 356  SKKDNVAGVTLPIFESYQDGSDTYELAGLARGGQQLA-KLKKNFQSAVKLLGRVS 517
            SK+D V     P   ++   S  Y+ +  +RGG  LA +L+      V LL R S
Sbjct: 980  SKRDFVQSSNTPTTTTHSSSSHRYQHSNSSRGGTPLAQRLRDERSGQVVLLSRAS 1034


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,540,713
Number of Sequences: 27780
Number of extensions: 263949
Number of successful extensions: 547
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)