Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_B01
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   3.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.4  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   7.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.8  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 354 GPRRTMLLVSPSQSLSHTRMVLIPMSWLVWPVVGSSL 464
           GP R +    P++ L H     IP  WLV+P    SL
Sbjct: 16  GPPRLLGWNVPAEELIH-----IPEHWLVYPEPNPSL 47


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +1

Query: 316 CATKCYQGSNQD*VQEGQCCW 378
           C+  C  G  +  V   QCCW
Sbjct: 587 CSLPCEVGQAKKYVAGEQCCW 607


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 219 LLKIIRNLT*RASAFFLRRPWPFTAPAR 136
           L+  I ++      FFLR+ +PF  P++
Sbjct: 220 LIYFIEDIGLNTYYFFLRQAFPFWLPSK 247


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
 Frame = +3

Query: 360 RRTMLLVSPSQSLSHTRMVLIPMSWLVWPVVGSSLQSSRRTSRAL*SFWVEL-ASLQTSF 536
           R+   L  PS +     M+     WL WP   S+        RA+ +  + + AS   +F
Sbjct: 197 RKEHHLEGPSYNSDIFAMIGTIFLWLFWPSFNSAALEGDDQQRAIINTLLSISASCVIAF 256

Query: 537 VTLDQVIK 560
            T   V K
Sbjct: 257 ATSALVSK 264


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 177 FFLRRPWPFTAPAR 136
           FFLR+ +PF  P++
Sbjct: 234 FFLRQAFPFWLPSK 247


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 420  IPMSWLVWPVVGSSLQSSRR 479
            +P   + W V G+ LQSS R
Sbjct: 1303 VPAPEVTWKVRGAVLQSSDR 1322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,180
Number of Sequences: 438
Number of extensions: 3036
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)