Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_A19
(385 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar... 59 2e-10
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 57 8e-10
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 37 0.001
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 29 0.25
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 27 1.0
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 3.1
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 25 5.4
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 24 7.1
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 24 9.4
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 24 9.4
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo... 24 9.4
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 24 9.4
>SPAC23H4.09 |cdb4||curved DNA-binding protein
Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 59.3 bits (137), Expect = 2e-10
Identities = 28/66 (42%), Positives = 42/66 (63%)
Frame = +3
Query: 126 LQQVIAKCVPDASAREICEFGDKLVLEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSP 305
+++V+ C P A +IC GD+L+ E KV++ KD+ KGIAF T VS N+ H SP
Sbjct: 36 IKKVVELCQPGAKIYDICVRGDELLNEAIKKVYRT-KDAYKGIAFPTAVSPNDMAAHLSP 94
Query: 306 IASEPD 323
+ S+P+
Sbjct: 95 LKSDPE 100
Score = 25.4 bits (53), Expect = 3.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 32 EMADEKEVEKTIAEDLVVTKYKLAGQIVNRVL 127
E E V+ +++ V KYK+AG++ V+
Sbjct: 5 EATSETAVDYSLSNPETVNKYKIAGEVSQNVI 36
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 57.2 bits (132), Expect = 8e-10
Identities = 25/63 (39%), Positives = 42/63 (66%)
Frame = +3
Query: 117 TESLQQVIAKCVPDASAREICEFGDKLVLEETNKVFKKEKDSKKGIAFSTCVSVNNCICH 296
+++ QV ++CVP AS REI +GD L+ E + ++K ++ +KGIA T + VNNC +
Sbjct: 29 SKAFHQVASRCVPGASTREISSYGDNLLHEYKSSIYKSQR-FEKGIAEPTSICVNNCAYN 87
Query: 297 FSP 305
++P
Sbjct: 88 YAP 90
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 37.1 bits (82), Expect = 0.001
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 201 LEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPIASE 317
+E T + +E K GI F T VS+N+C H++P A +
Sbjct: 148 IENTTRALVEEDGLKSGIGFPTGVSLNHCAAHYTPNAGD 186
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 29.1 bits (62), Expect = 0.25
Identities = 11/30 (36%), Positives = 22/30 (73%)
Frame = -2
Query: 345 NLLFSECNPVRSQWAKSDKCSCSQKRMLKM 256
+L+ S+C V+ QW+ ++CSCS + +L++
Sbjct: 2135 DLICSKCKTVK-QWSLKERCSCSGEWVLQL 2163
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 27.1 bits (57), Expect = 1.0
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 112 SEPSPCSKSSQN--AFQTHQQEKYVNLAINLYWRRLTRFSKRRKTP 243
S P+P + N AF T +Q Y N NLY+ ++ S R TP
Sbjct: 460 SLPTPLLGRAVNTTAFPTSRQNAYYNDPWNLYFIHFSKLSPLRFTP 505
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.4 bits (53), Expect = 3.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 159 ASAREICEFGDKLVLEETNKVFKKEKD 239
++ +E FG+KL E T K+ EKD
Sbjct: 865 SNLQEKINFGNKLAKEHTEKISSLEKD 891
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 24.6 bits (51), Expect = 5.4
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 82 CDQVQVSRTNSEPSPCSKSSQNAFQTHQQEKYVNLA 189
CDQV + RTN PC++S+++ ++ K ++LA
Sbjct: 504 CDQVWLDRTNL--FPCNRSTRSTL-PYRPTKLLDLA 536
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 24.2 bits (50), Expect = 7.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 283 LFTETHVENAMPFLESFSFLKTLLVSSNTS 194
L+ T +EN F+E + TL+ SSN +
Sbjct: 678 LYLSTFLENNKSFIEGLNSPNTLIGSSNVA 707
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 23.8 bits (49), Expect = 9.4
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 73 GFGCDQVQVSRTNSEPSPCSKSSQNAFQTHQQEKYVNLAINLY 201
GFG +V S S S S S+ + F TH + Y+N A + Y
Sbjct: 12 GFGVGRVPTSLYYSL-SDFSLSAISIFPTHYDQPYLNEAPSWY 53
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 23.8 bits (49), Expect = 9.4
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +3
Query: 177 CEFGDKLVLEETNKVFKKEKDSKKGIAFSTCVSVNNCICHFSPIAS 314
C++ ++ TN+V E S+ G F ++ I H + +AS
Sbjct: 1602 CDYNFSVIASSTNEVTISELTSESGCLFFHFEKDDSGIDHVTAVAS 1647
>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 23.8 bits (49), Expect = 9.4
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 261 STCVSVNNCICHFSP 305
S C SVN ICH P
Sbjct: 181 SVCTSVNEIICHGIP 195
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 23.8 bits (49), Expect = 9.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 180 EFGDKLVLEETNKVFKKEKDSKKG 251
E GD V E NK +K+K+ KKG
Sbjct: 203 ETGDATVEELQNKGKEKQKELKKG 226
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,494,797
Number of Sequences: 5004
Number of extensions: 27343
Number of successful extensions: 90
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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