Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_A18
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4B3.09c |||mitochondrial ribosomal protein subunit L12|Schiz... 72 6e-14
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 29 0.58
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 28 1.3
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 26 4.1
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 26 4.1
SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch... 26 5.4
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 26 5.4
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 25 7.2
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos... 25 9.5
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2... 25 9.5
>SPCC4B3.09c |||mitochondrial ribosomal protein subunit
L12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 206
Score = 72.1 bits (169), Expect = 6e-14
Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Frame = +1
Query: 220 KIEKIVSEITNLNLLEVSELSQVLKKRLNLPDXXXXXXXXXXXXXXXXXXXXXXXXXXXX 399
+I ++V +I++L+LLE SEL + LK++LN+ +
Sbjct: 76 QIGEMVDKISSLSLLETSELVKQLKEKLNIAEIAPMAAVAPAVASAAPSEEKAPEEKKEE 135
Query: 400 -TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLXE 576
T++ +K+ FD K +IKEVK LL G +LV AKKFVES P V+K +I K++AE +
Sbjct: 136 KTTWNLKLESFDAGSKAKVIKEVKSLL-GLSLVDAKKFVESAPKVLKENILKEDAEAIKS 194
Query: 577 ALTKV 591
L K+
Sbjct: 195 KLEKL 199
>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 455
Score = 29.1 bits (62), Expect = 0.58
Identities = 11/35 (31%), Positives = 26/35 (74%)
Frame = +1
Query: 193 EGVDKPVSPKIEKIVSEITNLNLLEVSELSQVLKK 297
E V KP++P++E+ SE+ + ++L+ +++ V++K
Sbjct: 224 ENVSKPINPRMERFSSEVKSSSILK-QQIAAVVEK 257
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +1
Query: 430 DDKQKVALIKEVKGLLEGFNLVQAKKFV--ESVPTVVKADISKDEAEKLXEALTKVGSHY 603
D Q L + K EG L A K + ES+P V++ + + + + L + + K+ +
Sbjct: 382 DAIQVETLTGDNKYYAEGHGLQDAHKGIIFESLPNVLQLQLKRFDYDMLRDMMVKINDRH 441
Query: 604 RN*IVIDISSHL 639
+ ID+ +L
Sbjct: 442 EFPLEIDLEPYL 453
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 163 TVTPLTIPVPEGVDKPVSPKIEKIVSEITNLNLLEVSELSQVLK 294
+V PL I EG+ + ++ +S I N NL E +S K
Sbjct: 501 SVVPLLIDENEGIRRTAEDVTDQFLSRIKNFNLGEKENVSAPAK 544
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 475 LEGFNLVQAKKFVESVPTVVKADISKD 555
++GF + + KK + +PTV AD KD
Sbjct: 533 IDGFFVAKLKKISDKIPTVNVADDMKD 559
>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 209
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = -1
Query: 378 LFFINSSRWSHC-ESAHW 328
LFF NSSR+S C ES W
Sbjct: 136 LFFSNSSRFSACEESGEW 153
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +1
Query: 436 KQKVALIKEVKGLLEGFNL--VQAKKFVESVPTV 531
KQ VA IKE+ LLE F + + F + +PT+
Sbjct: 142 KQAVASIKELNSLLENFGIPALSPIPFYKLIPTL 175
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 205 KPVSPKIEKIVSEITNLNLLEVSELSQVLKKRLNL 309
KP + KI + +++++E EL + +KKR N+
Sbjct: 539 KPTTSKITPSIPPAFDIHIIEGEELLEEMKKRENV 573
>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 209
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = +1
Query: 451 LIKE-VKGLLEGFNLVQAKKFVES 519
LI+E V G LEG N+V+AKK + +
Sbjct: 79 LIRERVYGDLEGMNVVEAKKLLNA 102
>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 825
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 429 KFRHFNCKTGLHSFRGCLFFINSSRWSHCE 340
KF +TG H G L ++ SS W+ E
Sbjct: 531 KFLKMGLETGWHGKFGSLNYVTSSTWARQE 560
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.133 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,228,835
Number of Sequences: 5004
Number of extensions: 41254
Number of successful extensions: 125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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