Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP12_F_A18
(651 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X79865-1|CAA56249.1| 198|Homo sapiens mitochondrial ribosomal p... 94 3e-19
BC007497-1|AAH07497.1| 198|Homo sapiens mitochondrial ribosomal... 94 3e-19
BC002344-1|AAH02344.1| 198|Homo sapiens mitochondrial ribosomal... 94 3e-19
AF059736-1|AAG32154.1| 198|Homo sapiens mitoribosomal protein L... 94 3e-19
AF105278-1|AAD16894.1| 99|Homo sapiens 5c5-2 protein protein. 73 7e-13
AB051337-1|BAB54927.1| 59|Homo sapiens mitochondrial ribosomal... 64 4e-10
U25041-1|AAC73110.1| 178|Homo sapiens 5C5 protein. 48 4e-05
BC068531-1|AAH68531.1| 856|Homo sapiens ATPase, H+ transporting... 32 1.5
BC022300-1|AAH22300.1| 372|Homo sapiens ATP6V0A2 protein protein. 32 1.5
AF112972-1|AAD04632.1| 856|Homo sapiens TJ6 protein. 32 1.5
EF036488-1|ABO65074.1| 83|Homo sapiens mitochondrial ribosomal... 31 4.7
>X79865-1|CAA56249.1| 198|Homo sapiens mitochondrial ribosomal
protein L7L12 protein.
Length = 198
Score = 94.3 bits (224), Expect = 3e-19
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Frame = +1
Query: 193 EGVDKPVSPKIEKIVSEITNLNLLEVSELSQVLKKRLNLPDXXXXXXXXXXXXXXXXXXX 372
+ K PKI+++V +I +L LLE+S+L+++LKK L + D
Sbjct: 54 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSGAVPAAAA 113
Query: 373 XXXXX-----XXXXTSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVK 537
T FTV++T+ KV LIKE+K ++G NLVQAKK VES+P +K
Sbjct: 114 QEAVEEDIPIAKERTHFTVRLTEAKPVDKVKLIKEIKNYIQGINLVQAKKLVESLPQEIK 173
Query: 538 ADISKDEAEKLXEALTKVG 594
A+++K EAEK+ AL VG
Sbjct: 174 ANVAKAEAEKIKAALEAVG 192
>BC007497-1|AAH07497.1| 198|Homo sapiens mitochondrial ribosomal
protein L12 protein.
Length = 198
Score = 94.3 bits (224), Expect = 3e-19
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Frame = +1
Query: 193 EGVDKPVSPKIEKIVSEITNLNLLEVSELSQVLKKRLNLPDXXXXXXXXXXXXXXXXXXX 372
+ K PKI+++V +I +L LLE+S+L+++LKK L + D
Sbjct: 54 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSGAVPAAAA 113
Query: 373 XXXXX-----XXXXTSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVK 537
T FTV++T+ KV LIKE+K ++G NLVQAKK VES+P +K
Sbjct: 114 QEAVEEDIPIAKERTHFTVRLTEAKPVDKVKLIKEIKNYIQGINLVQAKKLVESLPQEIK 173
Query: 538 ADISKDEAEKLXEALTKVG 594
A+++K EAEK+ AL VG
Sbjct: 174 ANVAKAEAEKIKAALEAVG 192
>BC002344-1|AAH02344.1| 198|Homo sapiens mitochondrial ribosomal
protein L12 protein.
Length = 198
Score = 94.3 bits (224), Expect = 3e-19
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Frame = +1
Query: 193 EGVDKPVSPKIEKIVSEITNLNLLEVSELSQVLKKRLNLPDXXXXXXXXXXXXXXXXXXX 372
+ K PKI+++V +I +L LLE+S+L+++LKK L + D
Sbjct: 54 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSGAVPAAAA 113
Query: 373 XXXXX-----XXXXTSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVK 537
T FTV++T+ KV LIKE+K ++G NLVQAKK VES+P +K
Sbjct: 114 QEAVEEDIPIAKERTHFTVRLTEAKPVDKVKLIKEIKNYIQGINLVQAKKLVESLPQEIK 173
Query: 538 ADISKDEAEKLXEALTKVG 594
A+++K EAEK+ AL VG
Sbjct: 174 ANVAKAEAEKIKAALEAVG 192
>AF059736-1|AAG32154.1| 198|Homo sapiens mitoribosomal protein L12
protein.
Length = 198
Score = 94.3 bits (224), Expect = 3e-19
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Frame = +1
Query: 193 EGVDKPVSPKIEKIVSEITNLNLLEVSELSQVLKKRLNLPDXXXXXXXXXXXXXXXXXXX 372
+ K PKI+++V +I +L LLE+S+L+++LKK L + D
Sbjct: 54 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSGAVPAAAA 113
Query: 373 XXXXX-----XXXXTSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVK 537
T FTV++T+ KV LIKE+K ++G NLVQAKK VES+P +K
Sbjct: 114 QEAVEEDIPIAKERTHFTVRLTEAKPVDKVKLIKEIKNYIQGINLVQAKKLVESLPQEIK 173
Query: 538 ADISKDEAEKLXEALTKVG 594
A+++K EAEK+ AL VG
Sbjct: 174 ANVAKAEAEKIKAALEAVG 192
>AF105278-1|AAD16894.1| 99|Homo sapiens 5c5-2 protein protein.
Length = 99
Score = 73.3 bits (172), Expect = 7e-13
Identities = 35/65 (53%), Positives = 47/65 (72%)
Frame = +1
Query: 400 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLXEA 579
T FTV++T+ KV LIKE+K ++G NLVQAKK VES+P +KA+++K EAEK+ A
Sbjct: 29 THFTVRLTEAKPVDKVKLIKEIKNYIQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAA 88
Query: 580 LTKVG 594
L VG
Sbjct: 89 LEAVG 93
>AB051337-1|BAB54927.1| 59|Homo sapiens mitochondrial ribosomal
protein L7/L12 protein.
Length = 59
Score = 64.1 bits (149), Expect = 4e-10
Identities = 30/51 (58%), Positives = 39/51 (76%)
Frame = +1
Query: 442 KVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLXEALTKVG 594
KV LIKE+K ++G NLVQAKK VES+P +KA+++K EAEK+ AL VG
Sbjct: 3 KVKLIKEIKNYIQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVG 53
>U25041-1|AAC73110.1| 178|Homo sapiens 5C5 protein.
Length = 178
Score = 47.6 bits (108), Expect = 4e-05
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Frame = +1
Query: 193 EGVDKPVSPKIEKIVSEITNLNLLEVSELSQVLKKRLNLPD-----XXXXXXXXXXXXXX 357
+ K PKI+++V +I +L LLE+S+L+++LKK L + D
Sbjct: 54 DNAPKEYPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSGAVPAAAA 113
Query: 358 XXXXXXXXXXXXXXTSFTVKMTKFDDKQKVALIKEVKGLLE 480
T FTV+ T+ KV LIKE+K ++
Sbjct: 114 QEAVEEDIPIAKERTHFTVRRTEAKPVDKVKLIKEIKNYIK 154
>BC068531-1|AAH68531.1| 856|Homo sapiens ATPase, H+ transporting,
lysosomal V0 subunit a2 protein.
Length = 856
Score = 32.3 bits (70), Expect = 1.5
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +1
Query: 124 LSRCSVLRQ---EVTQTVTPLTIPVPEGVDKPVSPKIEKIVSEITNLNLLEVSELSQVLK 294
+ RC L + + Q + IP+PEG P +P +++++ L LEV EL +V K
Sbjct: 55 VKRCEELERILVYLVQEINRADIPLPEGEASPPAPPLKQVLEMQEQLQKLEV-ELREVTK 113
Query: 295 KRLNL 309
+ L
Sbjct: 114 NKEKL 118
>BC022300-1|AAH22300.1| 372|Homo sapiens ATP6V0A2 protein protein.
Length = 372
Score = 32.3 bits (70), Expect = 1.5
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +1
Query: 124 LSRCSVLRQ---EVTQTVTPLTIPVPEGVDKPVSPKIEKIVSEITNLNLLEVSELSQVLK 294
+ RC L + + Q + IP+PEG P +P +++++ L LEV EL +V K
Sbjct: 55 VKRCEELERILVYLVQEINRADIPLPEGEASPPAPPLKQVLEMQEQLQKLEV-ELREVTK 113
Query: 295 KRLNL 309
+ L
Sbjct: 114 NKEKL 118
>AF112972-1|AAD04632.1| 856|Homo sapiens TJ6 protein.
Length = 856
Score = 32.3 bits (70), Expect = 1.5
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +1
Query: 124 LSRCSVLRQ---EVTQTVTPLTIPVPEGVDKPVSPKIEKIVSEITNLNLLEVSELSQVLK 294
+ RC L + + Q + IP+PEG P +P +++++ L LEV EL +V K
Sbjct: 55 VKRCEELERILVYLVQEINRADIPLPEGEASPPAPPLKQVLEMQEQLQKLEV-ELREVTK 113
Query: 295 KRLNL 309
+ L
Sbjct: 114 NKEKL 118
>EF036488-1|ABO65074.1| 83|Homo sapiens mitochondrial ribosomal
protein L12 protein.
Length = 83
Score = 30.7 bits (66), Expect = 4.7
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +1
Query: 193 EGVDKPVSPKIEKIVSEITNLNLLEVSELS 282
+ K PKI+++V +I +L LLE+S+L+
Sbjct: 54 DNAPKEYPPKIQQLVQDIASLTLLEISDLN 83
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.317 0.133 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,754,104
Number of Sequences: 237096
Number of extensions: 1346436
Number of successful extensions: 3161
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3157
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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