Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP12_F_A05
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...    77   9e-15
AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...    57   1e-08
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...    39   0.002
Z70212-2|CAA94163.1|  430|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z83118-1|CAB05575.1|  975|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z81552-6|CAB04489.1|  975|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score = 77.0 bits (181), Expect = 9e-15
 Identities = 34/56 (60%), Positives = 45/56 (80%)
 Frame = +3

Query: 60  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKYVYL 227
           SKVSR++L E +  VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++  ++
Sbjct: 2   SKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHI 57



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
 Frame = +2

Query: 383 SYTVRLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMDXXXXXXXXXXXXXXRNWPK-IDA 559
           S ++RLK+IPRP M+VCV GDQ H DEA   ++P M               +   K  DA
Sbjct: 49  SGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDA 108

Query: 560 FLASXSLI 583
           F+AS SLI
Sbjct: 109 FIASESLI 116


>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
 Frame = +2

Query: 383 SYTVRLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMDXXXXXXXXXXXXXXRNWPK-IDA 559
           S ++RLK+IPRP M+VCV GDQ H DEA   ++P M               +   K  DA
Sbjct: 19  SGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDA 78

Query: 560 FLASXSLI 583
           F+AS SLI
Sbjct: 79  FIASESLI 86



 Score = 36.3 bits (80), Expect = 0.016
 Identities = 13/20 (65%), Positives = 18/20 (90%)
 Frame = +3

Query: 168 KNYDPQKDKRFSGTVKYVYL 227
           KNYDPQKDKRFSG+++  ++
Sbjct: 8   KNYDPQKDKRFSGSIRLKHI 27


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 422 MQVCVLGDQQHCDEAKTLNVPCMDXXXXXXXXXXXXXXRNWPK-IDAFLASXSLI 583
           M+VCV GDQ H DEA   ++P M               +   K  DAF+AS SLI
Sbjct: 1   MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLI 55


>Z70212-2|CAA94163.1|  430|Caenorhabditis elegans Hypothetical
           protein R04D3.3 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +3

Query: 30  IGGSLTNKMSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 197
           +GGS    + +   +D+L E ++ + +S K K    LET+  Q G K  D    +R
Sbjct: 189 VGGSSMEDVLTSDEKDSLSEAISNLPKSPKSKTDRDLETL-AQSGSKTRDSHSRRR 243


>Z83118-1|CAB05575.1|  975|Caenorhabditis elegans Hypothetical
           protein F56G4.1 protein.
          Length = 975

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 340 PLFRLWVKSRQYAPTPCTDSFWWNFNKK 257
           PL+ L V +   A   C   FWW+ N+K
Sbjct: 72  PLYYLSVAAITIAVHVCLREFWWDVNRK 99


>Z81552-6|CAB04489.1|  975|Caenorhabditis elegans Hypothetical
           protein F56G4.1 protein.
          Length = 975

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 340 PLFRLWVKSRQYAPTPCTDSFWWNFNKK 257
           PL+ L V +   A   C   FWW+ N+K
Sbjct: 72  PLYYLSVAAITIAVHVCLREFWWDVNRK 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,344,906
Number of Sequences: 27780
Number of extensions: 277432
Number of successful extensions: 569
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)