Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_P17
(365 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99277-1|CAB16485.1| 491|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z81031-8|CAJ55248.1| 363|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z69903-8|CAD56585.3| 363|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z69903-5|CAH60762.2| 497|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z69903-4|CAA93775.3| 479|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z69903-3|CAI79241.1| 480|Caenorhabditis elegans Hypothetical pr... 26 9.5
U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cycla... 26 9.5
AY836558-1|AAW21316.1| 479|Caenorhabditis elegans casein kinase... 26 9.5
AY836557-1|AAW21315.1| 297|Caenorhabditis elegans casein kinase... 26 9.5
AY836556-1|AAW21314.1| 479|Caenorhabditis elegans casein kinase... 26 9.5
AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor typ... 26 9.5
>Z99277-1|CAB16485.1| 491|Caenorhabditis elegans Hypothetical
protein Y53C12A.2 protein.
Length = 491
Score = 25.8 bits (54), Expect = 9.5
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 122 ILQQSDKQRKIKY-GQSHICSNGSSHPLLHTET*IQEMNYKQNLLACFCKGLL 277
I++ + Q + Y Q+H SNG++H +LHT + MN ++ C GL+
Sbjct: 156 IMRATFSQVQTNYINQTH--SNGATHEVLHTGY-VDGMNVLGIIVFCIVMGLV 205
>Z81031-8|CAJ55248.1| 363|Caenorhabditis elegans Hypothetical
protein F46F2.2b protein.
Length = 363
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 93 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 206
+ L G A+Y + T+RG + R +G V +YF
Sbjct: 234 ENKNLTGTARYASINTHRGIEQSRRDDIESLGYVFMYF 271
>Z69903-8|CAD56585.3| 363|Caenorhabditis elegans Hypothetical
protein F46F2.2b protein.
Length = 363
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 93 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 206
+ L G A+Y + T+RG + R +G V +YF
Sbjct: 234 ENKNLTGTARYASINTHRGIEQSRRDDIESLGYVFMYF 271
>Z69903-5|CAH60762.2| 497|Caenorhabditis elegans Hypothetical
protein F46F2.2c protein.
Length = 497
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 93 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 206
+ L G A+Y + T+RG + R +G V +YF
Sbjct: 350 ENKNLTGTARYASINTHRGIEQSRRDDIESLGYVFMYF 387
>Z69903-4|CAA93775.3| 479|Caenorhabditis elegans Hypothetical
protein F46F2.2a protein.
Length = 479
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 93 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 206
+ L G A+Y + T+RG + R +G V +YF
Sbjct: 350 ENKNLTGTARYASINTHRGIEQSRRDDIESLGYVFMYF 387
>Z69903-3|CAI79241.1| 480|Caenorhabditis elegans Hypothetical
protein F46F2.2d protein.
Length = 480
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 93 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 206
+ L G A+Y + T+RG + R +G V +YF
Sbjct: 350 ENKNLTGTARYASINTHRGIEQSRRDDIESLGYVFMYF 387
>U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cyclase
protein 8 protein.
Length = 1206
Score = 25.8 bits (54), Expect = 9.5
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +3
Query: 6 FFATLVSILRVLCSNYIIFQIRMAGDSSVDESQLKGLAKYFNSQTNRGRLNTARATYAVM 185
FFA + R L + + F+I +DE QLK + +++T +N +A++
Sbjct: 552 FFAQKILEKRAL--DKLPFRIYRDDLQFIDEEQLKSMLSLGSTRTKMSNMNYGSRNHAIV 609
Query: 186 G 188
G
Sbjct: 610 G 610
>AY836558-1|AAW21316.1| 479|Caenorhabditis elegans casein kinase I
epsilon/delta kin-20C protein.
Length = 479
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 93 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 206
+ L G A+Y + T+RG + R +G V +YF
Sbjct: 350 ENKNLTGTARYASINTHRGIEQSRRDDIESLGYVFMYF 387
>AY836557-1|AAW21315.1| 297|Caenorhabditis elegans casein kinase I
epsilon/delta kin-20B protein.
Length = 297
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 93 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 206
+ L G A+Y + T+RG + R +G V +YF
Sbjct: 168 ENKNLTGTARYASINTHRGIEQSRRDDIESLGYVFMYF 205
>AY836556-1|AAW21314.1| 479|Caenorhabditis elegans casein kinase I
epsilon/delta kin-20A protein.
Length = 479
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 93 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 206
+ L G A+Y + T+RG + R +G V +YF
Sbjct: 350 ENKNLTGTARYASINTHRGIEQSRRDDIESLGYVFMYF 387
>AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor type
guanyly cyclase protein.
Length = 1152
Score = 25.8 bits (54), Expect = 9.5
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +3
Query: 6 FFATLVSILRVLCSNYIIFQIRMAGDSSVDESQLKGLAKYFNSQTNRGRLNTARATYAVM 185
FFA + R L + + F+I +DE QLK + +++T +N +A++
Sbjct: 526 FFAQKILEKRAL--DKLPFRIYRDDLQFIDEEQLKSMLSLGSTRTKMSNMNYGSRNHAIV 583
Query: 186 G 188
G
Sbjct: 584 G 584
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,563,647
Number of Sequences: 27780
Number of extensions: 111111
Number of successful extensions: 323
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -