Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_P17
         (365 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   1.1  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   4.6  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   4.6  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 308 SHDFNYVLYNLTIPYRNMLIN 246
           ++ +NY  YN  + Y+N +IN
Sbjct: 328 NYKYNYNNYNKKLYYKNYIIN 348


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 296 NYVLYNLTIPYRNMLIN 246
           NY  YN  + Y+N +IN
Sbjct: 96  NYNNYNKKLYYKNYIIN 112


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 296 NYVLYNLTIPYRNMLIN 246
           NY  YN  + Y+N +IN
Sbjct: 337 NYNNYNKKLYYKNYIIN 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,500
Number of Sequences: 438
Number of extensions: 1305
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)