Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_P16
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0121 - 13673432-13673446,13673564-13673791                       29   4.3  
04_04_0838 - 28550036-28550237,28550595-28550676,28550972-285510...    28   7.5  
01_06_1797 + 39941482-39941608,39942302-39942497,39942601-399428...    28   7.5  

>07_03_0121 - 13673432-13673446,13673564-13673791
          Length = 80

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 178 PGPIQDVGNRYGSPDSGVPEECRDKNFCTIKPPDYPQ 288
           P P+ D  +  G   SG P  C     C ++ P  P+
Sbjct: 3   PAPLCDAAHPAGGRGSGAPPGCERLRSCALRRPSCPE 39


>04_04_0838 - 28550036-28550237,28550595-28550676,28550972-28551011,
            28551342-28551416,28551448-28551543,28551710-28551805,
            28551897-28551974,28552064-28552170,28552450-28552477,
            28552777-28552898,28554106-28554172,28554336-28554508,
            28554763-28554846,28555616-28555733,28556093-28556164,
            28557026-28557118,28557484-28557636,28558000-28558086,
            28559436-28559528,28560416-28560643,28561106-28561207,
            28561390-28561596,28561798-28561846,28562385-28562537,
            28562649-28562712,28562905-28563175,28564008-28564072,
            28564184-28564337
          Length = 1052

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +1

Query: 229  VPEECRDKNFCTIKPPDYPQ--ARFNDMFKDTEY 324
            VP  CRD+N+  I   + P     F+DM K T +
Sbjct: 951  VPNGCRDENYDDISTKNAPSKAPMFSDMLKSTSF 984


>01_06_1797 +
           39941482-39941608,39942302-39942497,39942601-39942828,
           39943157-39943388,39943476-39943583,39943696-39943968,
           39944261-39944545
          Length = 482

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 206 GTGVRTAAYLKSVGTKTSAPSNHQIIHR 289
           GTG+    YL +V    ++P+  Q+IHR
Sbjct: 43  GTGINKPDYLGTVDVDPNSPTYSQVIHR 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,594,029
Number of Sequences: 37544
Number of extensions: 445004
Number of successful extensions: 1019
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)