Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_P14
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844...   183   8e-47
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317...   183   1e-46
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892...   167   6e-42
01_06_0579 + 30379243-30379617                                         29   2.2  
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904...    29   2.9  
09_06_0121 + 20975132-20975755,20976834-20976977,20977333-209774...    29   3.8  
11_01_0520 + 4078075-4078198,4078726-4078957,4079068-4079147,407...    28   5.0  
11_01_0572 + 4565353-4565535,4566856-4567095,4567922-4568086,456...    28   6.6  
02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797     27   8.7  

>07_03_1667 +
           28484069-28484071,28484151-28484240,28484339-28484491,
           28484575-28484757,28486137-28486295
          Length = 195

 Score =  183 bits (446), Expect = 8e-47
 Identities = 91/168 (54%), Positives = 118/168 (70%), Gaps = 6/168 (3%)
 Frame = +3

Query: 54  DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 233
           ++K +RT  +S+D+               T + FN ++L+RLFMS+ NRPP+S+ RL R 
Sbjct: 11  NKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRPPLSMRRLVRF 70

Query: 234 M--KKPTREGL----IAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTF 395
           M  K P R  +    IAV+VGTVT+D R+Y++P M VAAL  TE ARARI+ AGGE LTF
Sbjct: 71  MEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARIINAGGECLTF 130

Query: 396 DQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVXXQG 539
           DQLALRAP G+ TVL++G +NAREAV+HFGPAPG P S+TKPYV  +G
Sbjct: 131 DQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKG 178


>05_01_0401 +
           3169979-3169981,3170071-3170160,3170556-3170684,
           3170814-3170999,3172001-3172159
          Length = 188

 Score =  183 bits (445), Expect = 1e-46
 Identities = 90/162 (55%), Positives = 114/162 (70%)
 Frame = +3

Query: 54  DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 233
           ++K +RT  +S D+               T + FN ++L+RLFMS+ NRPP+S+ RLA+ 
Sbjct: 11  NKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRPPLSLRRLAKF 70

Query: 234 MKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALR 413
           M+    E  IAV+VGTVT+D R+ +IPKM V AL  TE ARARI+ AGGE LTFDQLALR
Sbjct: 71  MEGK-EENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGECLTFDQLALR 129

Query: 414 APTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVXXQG 539
           AP G+ TVL++G +NAREAVRHFG APG P SHTKPYV  +G
Sbjct: 130 APLGENTVLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKG 171


>03_02_0954 -
           12687373-12687582,12688885-12689067,12689160-12689288,
           12689375-12689464,12689548-12689550
          Length = 204

 Score =  167 bits (406), Expect = 6e-42
 Identities = 90/179 (50%), Positives = 115/179 (64%), Gaps = 17/179 (9%)
 Frame = +3

Query: 54  DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 233
           ++K +RT  KS D+               T + FN ++LRRLFMS+ NRPP+S+ RL R 
Sbjct: 11  NKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRPPLSLRRLVRF 70

Query: 234 MKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALR 413
           M+   +E  IAV+VGTVT+D R+Y++P M VAAL  TE ARARI+  GGE LTFDQLALR
Sbjct: 71  MEG--KENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECLTFDQLALR 128

Query: 414 APTGKKT-----------------VLVQGQRNAREAVRHFGPAPGAPRSHTKPYVXXQG 539
           AP G+ T                 VL++G +NAREAV+HFGPAPG P S+TKPYV  +G
Sbjct: 129 APLGQNTYIAMPEILTIDNFALLQVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKG 187


>01_06_0579 + 30379243-30379617
          Length = 124

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -3

Query: 306 CTVSRHL*LSPLPRQSNPHELASS 235
           CT+S H   SP+ R S+PH LASS
Sbjct: 11  CTISCH---SPMRRSSSPHRLASS 31


>06_01_1101 -
           9044679-9045320,9045484-9045890,9046020-9046274,
           9046375-9046498,9047237-9047289,9047388-9047648,
           9047795-9047848,9047975-9048458,9048554-9048592
          Length = 772

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 277 PTTTAIKPSRVGFFMWR-AKRDTEIGGRLIRLIKSR 173
           P TTA KP RV F + +  K D E+ G L  L+++R
Sbjct: 676 PNTTAPKPKRVRFALPKDTKIDREVRGELQELMEAR 711


>09_06_0121 +
           20975132-20975755,20976834-20976977,20977333-20977457,
           20978090-20978194,20978755-20978989
          Length = 410

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +3

Query: 144 NAKFNQIVLRRLFMSR-INRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 320
           N K N  VL  L +S+ +  P ++V  L  H + P       +V+GT T+D     +  +
Sbjct: 21  NWKKNAPVLYDLVISQPLEWPSLTVQWLPSHSRSPGSARSHRLVLGTHTSDETPNHL-LL 79

Query: 321 TVAALHVTEKARARILAAGGEI 386
             AAL +  +  A   AAGG +
Sbjct: 80  ADAALPLPPRLAAAAAAAGGAV 101


>11_01_0520 +
           4078075-4078198,4078726-4078957,4079068-4079147,
           4079256-4079409,4079438-4079494,4080733-4080811,
           4081013-4081094,4081168-4081223,4081310-4081492
          Length = 348

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 374 SSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 276
           SS ++  SF  +  SS+RHL  L+ +  +  CP
Sbjct: 96  SSLDSVRSFAKSFNSSYRHLNVLINNAGVMSCP 128


>11_01_0572 +
           4565353-4565535,4566856-4567095,4567922-4568086,
           4568612-4568887
          Length = 287

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 388 LLLISWLFVLRLARRQYWYKVSEML 462
           LL+++WLFV+   RR  W +V E+L
Sbjct: 143 LLVLAWLFVIDFGRR-VWGEVDELL 166


>02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797
          Length = 518

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 270 VVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAL 410
           ++G++  DV    I  + VAA+ V  + R  +   GG +L   Q+A+
Sbjct: 329 ILGSIITDV--VSISSVAVAAVVVDRRGRRTLFMVGGAVLILCQVAM 373


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,684,291
Number of Sequences: 37544
Number of extensions: 363914
Number of successful extensions: 1003
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)