Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_P12
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 192 2e-49
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 190 8e-49
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 189 1e-48
01_01_0891 + 7023383-7023700,7024627-7024705,7024888-7024951,702... 29 2.5
06_03_0290 - 19193707-19193752,19193822-19194090 28 5.7
04_03_0983 + 21423086-21423280,21423330-21423404,21423531-214236... 28 7.5
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 192 bits (469), Expect = 2e-49
Identities = 94/149 (63%), Positives = 118/149 (79%)
Frame = +3
Query: 192 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 371
TKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQG+NVL NF GM TTDKLR
Sbjct: 54 TKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLR 111
Query: 372 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEI 551
+VKKWQTLIEA++DVKTTDGY+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEI 171
Query: 552 ITRDVTNSELREVVNKLIPDSIAKDIXKA 638
+ ++ +L+E+V+K IP+ I K+I KA
Sbjct: 172 MANQASSCDLKELVSKFIPEVIGKEIEKA 200
Score = 35.9 bits (79), Expect = 0.028
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1
Query: 91 VDPFTRKDWYDVKAP 135
VDPF +KDWYD+KAP
Sbjct: 21 VDPFAKKDWYDIKAP 35
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 137 SMFSKRQVGTTLVNRTQGNE 196
S+F+ R +G TLV+RTQG +
Sbjct: 36 SVFNVRNIGKTLVSRTQGTK 55
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 190 bits (463), Expect = 8e-49
Identities = 93/149 (62%), Positives = 117/149 (78%)
Frame = +3
Query: 192 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 371
TKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQG+NVL NF GM TTDKLR
Sbjct: 54 TKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLR 111
Query: 372 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEI 551
+VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEI 171
Query: 552 ITRDVTNSELREVVNKLIPDSIAKDIXKA 638
+ ++ +L+E+V+K IP+ I K+I KA
Sbjct: 172 MVNQASSCDLKELVSKFIPEVIGKEIEKA 200
Score = 35.9 bits (79), Expect = 0.028
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1
Query: 91 VDPFTRKDWYDVKAP 135
VDPF +KDWYD+KAP
Sbjct: 21 VDPFAKKDWYDIKAP 35
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2
Query: 137 SMFSKRQVGTTLVNRTQGNE 196
S+F+ R VG TLV+RTQG +
Sbjct: 36 SVFNVRNVGKTLVSRTQGTK 55
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 189 bits (461), Expect = 1e-48
Identities = 93/149 (62%), Positives = 116/149 (77%)
Frame = +3
Query: 192 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 371
TKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQGRNVL NF GM TTDKLR
Sbjct: 54 TKIASEGLKHRVFEVSLADLQNDED--QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLR 111
Query: 372 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEI 551
+VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEI 171
Query: 552 ITRDVTNSELREVVNKLIPDSIAKDIXKA 638
+ + +L+E+V+K IP+ I K+I K+
Sbjct: 172 MANQASTCDLKELVSKFIPEVIGKEIEKS 200
Score = 36.3 bits (80), Expect = 0.021
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = +1
Query: 91 VDPFTRKDWYDVKAP 135
VDPF++KDWYD+KAP
Sbjct: 21 VDPFSKKDWYDIKAP 35
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 137 SMFSKRQVGTTLVNRTQGNE 196
++FS R +G TLV+RTQG +
Sbjct: 36 TVFSVRNIGKTLVSRTQGTK 55
>01_01_0891 +
7023383-7023700,7024627-7024705,7024888-7024951,
7025324-7025401,7025513-7025708,7025895-7025963,
7026115-7026254,7026425-7026547,7027390-7027582,
7028872-7029034,7029433-7029476,7029683-7029724
Length = 502
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +3
Query: 54 VEGR*KRC*EEDCRPIHSQRLVRCQGSXLCSARGKSAPRLSTVPRVTKIASEGLKGRVFE 233
V GR +R E RP H L+RC+ + G S P T A KG +++
Sbjct: 11 VHGRLRRSPELHARPYHRPSLLRCRAFKQEADNGGEEASSSPPPPTTAEARRRRKGPLYK 70
Query: 234 VSLA 245
+ A
Sbjct: 71 LKAA 74
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 328 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 417
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>04_03_0983 +
21423086-21423280,21423330-21423404,21423531-21423632,
21423721-21423774,21423880-21423972,21424526-21424618,
21427329-21427433,21427517-21427615,21427701-21427997,
21428512-21428622
Length = 407
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -2
Query: 370 LSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARETSK 227
+++ +R+ PW L++ R T +A + +KD SA + +S E K
Sbjct: 274 ITIREIRNHPWFLKNLPRELTEAAQAMYYKKDNSAPTYSVQSVEEIMK 321
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,170,439
Number of Sequences: 37544
Number of extensions: 383032
Number of successful extensions: 1026
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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