Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_P10
(589 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal prot... 202 1e-52
Z75541-6|CAA99857.2| 644|Caenorhabditis elegans Hypothetical pr... 31 0.80
AF440800-1|AAL28139.1| 644|Caenorhabditis elegans transcription... 31 0.80
Z99171-7|CAB16312.1| 188|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical pr... 28 5.7
U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z75541-7|CAI79201.1| 197|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z34799-2|CAA84318.1| 692|Caenorhabditis elegans Hypothetical pr... 27 7.5
AF022971-3|AAG23977.1| 474|Caenorhabditis elegans Hypothetical ... 27 9.9
>U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 23 protein.
Length = 140
Score = 202 bits (493), Expect = 1e-52
Identities = 93/109 (85%), Positives = 101/109 (92%)
Frame = +3
Query: 96 GAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVI 275
GAV+NCADNTGAKNL+VI+V GI+GRLNRLP+AG GDM V +VKKGKPELRKKV+ VVI
Sbjct: 23 GAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVI 82
Query: 276 RQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 422
RQRK FRR+DG FIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 83 RQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +2
Query: 56 AGAKFRISLGLPXGS 100
+GAKFRISLGLP G+
Sbjct: 10 SGAKFRISLGLPVGA 24
>Z75541-6|CAA99857.2| 644|Caenorhabditis elegans Hypothetical
protein F52B5.5a protein.
Length = 644
Score = 30.7 bits (66), Expect = 0.80
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 442 LSLEYTFKISSCVLLSFPSTSKSNPKNYNLRNRHL-QCKCAKLKYT 576
++LE F +++ PSTS S+P N N R R L +C YT
Sbjct: 443 VNLENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYT 488
>AF440800-1|AAL28139.1| 644|Caenorhabditis elegans transcription
factor CEP-1 protein.
Length = 644
Score = 30.7 bits (66), Expect = 0.80
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 442 LSLEYTFKISSCVLLSFPSTSKSNPKNYNLRNRHL-QCKCAKLKYT 576
++LE F +++ PSTS S+P N N R R L +C YT
Sbjct: 443 VNLENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYT 488
>Z99171-7|CAB16312.1| 188|Caenorhabditis elegans Hypothetical
protein F47G4.8 protein.
Length = 188
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 479 TQLLILNVYSSDRARV*GNTRPQISTFFGYRPCDGRALHFALVI 348
T LL ++ S RAR+ P + F YRPC R L + ++
Sbjct: 80 TTLLGNSIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPYRQIL 123
>Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical
protein T23D5.9 protein.
Length = 354
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 347 DYDTRIVLKVYKYSITPSERFPL 279
DY + V K+Y YSIT RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184
>U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical
protein W03B1.2 protein.
Length = 814
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 190 AGSLFRRPLIPWTAITYRFFAPVLSAQLITA 98
A LFR ++P+ TY F +L L+TA
Sbjct: 562 ASCLFRSTIMPFVVFTYIFVTGILLVNLLTA 592
>Z75541-7|CAI79201.1| 197|Caenorhabditis elegans Hypothetical
protein F52B5.5b protein.
Length = 197
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 460 FKISSCVLLSFPSTSKSNPKNYNLRNRHL-QCKCAKLKYT 576
F +++ PSTS S+P N N R R L +C YT
Sbjct: 2 FNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYT 41
>Z34799-2|CAA84318.1| 692|Caenorhabditis elegans Hypothetical
protein F34D10.4 protein.
Length = 692
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +2
Query: 35 REDVVVPAGAKFRISLGLPXGSSNQLRRQHRGKESVCDRCPRYQRSPEQTA 187
R VP A FR G GSS++L + R SV R P +P T+
Sbjct: 349 RGRATVPMNANFRA--GHQTGSSSRLESRSRATASVGARAPSRAPAPSSTS 397
>AF022971-3|AAG23977.1| 474|Caenorhabditis elegans Hypothetical
protein C31B8.7 protein.
Length = 474
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -3
Query: 212 NHVPGTGRRQSVQATFDTLDSDHIQILCPCVVGAVDYCSXLGDPGR 75
N G+G + +V A + D I P +G + YC +G G+
Sbjct: 108 NSRSGSGEKINVLAAYSYKDHFSATISIPKKIGTIAYCRYVGADGK 153
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,826,178
Number of Sequences: 27780
Number of extensions: 274777
Number of successful extensions: 743
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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