Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_P09
(512 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132876-13|CAD21665.1| 117|Caenorhabditis elegans Hypothetical... 176 7e-45
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr... 29 2.0
AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical ... 28 3.4
AC024761-10|AAP13759.1| 501|Caenorhabditis elegans Cop-9 signal... 28 3.4
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ... 28 4.5
Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical pr... 27 6.0
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 27 6.0
U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily ass... 27 7.9
AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical ... 27 7.9
AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical ... 27 7.9
>AL132876-13|CAD21665.1| 117|Caenorhabditis elegans Hypothetical
protein Y105E8A.16 protein.
Length = 117
Score = 176 bits (429), Expect = 7e-45
Identities = 78/101 (77%), Positives = 95/101 (94%)
Frame = +2
Query: 167 HRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTW 346
HRIR+TLTS+NV+ LEKVCA LI+GAK + L VKGP+RMPTK+LRITTRKTPCGEGSKTW
Sbjct: 17 HRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPCGEGSKTW 76
Query: 347 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 469
DRFQMRIHKR+I+LH+P+E+++QITSI+IEPGV++EVT AD
Sbjct: 77 DRFQMRIHKRLINLHAPAEVLRQITSISIEPGVDIEVTRAD 117
>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
protein H03E18.1 protein.
Length = 1147
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 209 LEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGE 331
+E V A + G KK+ + K + PTK +T++ P E
Sbjct: 359 VELVTAKTVEGEKKETKKPKSTTKKPTKTAAASTKRPPTTE 399
>AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical
protein W03F11.1 protein.
Length = 235
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 127 QRHRETPGRGLPYPPHQDHSYFSQCA 204
Q HR PG +PYP DH+ F +C+
Sbjct: 84 QGHRCYPGTRIPYP--HDHTMFLECS 107
>AC024761-10|AAP13759.1| 501|Caenorhabditis elegans Cop-9
signalosome subunit protein 3 protein.
Length = 501
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -3
Query: 507 FFQKYFIGGSAYASAMVTSTSTPGSMLIEVICFTISE 397
FF K F G S+ +SA +S GSM E +C I+E
Sbjct: 4 FFNKLFTGASSSSSAAASSGMDLGSM--ESLCAAINE 38
>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
protein F28B3.1 protein.
Length = 1539
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 140 KPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKK 250
+ +A+ SP HRI +TS+N C+ L+ A++
Sbjct: 943 RSRAQSSPDHRILTLVTSKNAEQDTATCSTLLKRAER 979
>Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical protein
F55G11.9 protein.
Length = 1431
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 504 FQKYFIGGSAYASAMVTSTSTPGSMLIEVICFT 406
F YF+ Y +A + +T T GS+L+ V C T
Sbjct: 958 FLLYFVS-LVYLTASLINTPTKGSLLLYVFCLT 989
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Frame = +1
Query: 85 PEFNKQHGSRCSVRQRHRETPGRGL-PYPPHQDHSYF 192
P + H R R H G P+PPH H +F
Sbjct: 399 PPHHHHHDGRSPSRHGHHHHHHHGCRPFPPHHGHHHF 435
>U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily
assigned gene nameprotein 158 protein.
Length = 1003
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 207 ERTL-REVRVILMRWIGETSAWGFSMSLPDTTA 112
ERTL E R ++MR + + S G S+SLP A
Sbjct: 838 ERTLLMEERTMMMRDLQKVSGGGMSLSLPPANA 870
>AF038609-2|AAK29794.1| 226|Caenorhabditis elegans Hypothetical
protein C54E4.2a protein.
Length = 226
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 104 MAAAVVSGKDIEKPQAEVSPIH 169
++AA +S +D+EKP + P+H
Sbjct: 14 ISAAYISSEDLEKPSSADKPVH 35
>AF038609-1|AAO61425.1| 234|Caenorhabditis elegans Hypothetical
protein C54E4.2b protein.
Length = 234
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 104 MAAAVVSGKDIEKPQAEVSPIH 169
++AA +S +D+EKP + P+H
Sbjct: 14 ISAAYISSEDLEKPSSADKPVH 35
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,105,714
Number of Sequences: 27780
Number of extensions: 269697
Number of successful extensions: 636
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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