Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_P08
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...   113   3e-26
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    29   0.44 
SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   2.3  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.1  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   4.1  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   7.1  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   7.1  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   7.1  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score =  113 bits (271), Expect = 3e-26
 Identities = 63/132 (47%), Positives = 85/132 (64%)
 Frame = +3

Query: 204 DIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAK 383
           D+ I G NPSAE+A+E  +   E+  ++V + RL  T +F DKKSY  Y+K YMK + A+
Sbjct: 42  DVDI-GANPSAEDAEENAEEGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKAR 98

Query: 384 LEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQIPIM 563
           L+E  P++V VF+ N    +K IL  FK+  F+ GESMD D MV +M YR+ DG   P M
Sbjct: 99  LQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPDAMVVLMNYRE-DGI-TPYM 156

Query: 564 MFFKHGLEEEKF 599
           +FFK GL  EKF
Sbjct: 157 IFFKDGLVSEKF 168



 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 20/40 (50%), Positives = 30/40 (75%)
 Frame = +2

Query: 83  MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQG 202
           M +YKD+I+GDE+ SD Y +K VD+++YE   ++VT  QG
Sbjct: 1   MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQG 40


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 279 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKT 425
           +D V  ++L+E   F ++K  T+YLK   + L  K +   PD VE   T
Sbjct: 89  IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135


>SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 101

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 557 WYLRTIKVSIFHHGNHAITIHRLPSKELKFL 465
           WY++T K+SI    N+  + +R P  +  FL
Sbjct: 12  WYMKTDKISIDETSNNMSSKYRAPQDDPMFL 42


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -2

Query: 555 VFAYHQSLYIPSWQPC-HHN 499
           V A+ Q L++P W PC  HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 299 VVQDYVNSALDGRVRALVSLFSRRIKTLDLDIXPVL 192
           V++D +NS LDG +  +    S R +T  LD+  ++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLSDIV 376


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 479 ELKFLKPAEDVFHYFVHVCFKYFNLVR 399
           +  FLKP   ++ YF+ +  +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 634 FGLLSYFLSNI*NFSSSRPCLKNIMIGICVPSKSLY 527
           F LL+       NFS+ R CL+N ++  CVP   +Y
Sbjct: 783 FELLNNLTEARKNFSNYRDCLENCVLP-CVPFLGVY 817


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 211 WISXLCSRHQPTGHFVNNFIDQFHFVG 131
           W S  CS+   TG   +NFI  F   G
Sbjct: 216 WFSRRCSKINITGSVFDNFIPSFFSFG 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,737
Number of Sequences: 5004
Number of extensions: 49922
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)