Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_P07
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   250   1e-67
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   250   2e-67
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    26   4.8  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    25   8.3  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  250 bits (612), Expect = 1e-67
 Identities = 117/170 (68%), Positives = 139/170 (81%), Gaps = 1/170 (0%)
 Frame = +3

Query: 45  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 224
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 225 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 404
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQD 120

Query: 405 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVXKR-VLPAKEGKE 551
           IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++V +R V+P KEGK+
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGKK 170


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  250 bits (611), Expect = 2e-67
 Identities = 116/170 (68%), Positives = 139/170 (81%), Gaps = 1/170 (0%)
 Frame = +3

Query: 45  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 224
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 225 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 404
           FPM QGVL   RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+
Sbjct: 61  FPMFQGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQD 120

Query: 405 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVXKR-VLPAKEGKE 551
           IPGLTD  VP+RLGPKRASKIR+ FNLSKEDDVR++V +R V+P KEGK+
Sbjct: 121 IPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGKK 170


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = -2

Query: 557 SIFFSFLGWEHAFXDITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNN 378
           S+ FS  G   A       +I + K E +   GSTFG   +G       R++   L H+N
Sbjct: 79  SVRFSPNGQYLASGSDDRVVIIWHKEEAIPGLGSTFG---SGEKHTENWRSYRRLLGHDN 135

Query: 377 KSQD 366
             QD
Sbjct: 136 DIQD 139


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 65  PGNGMPEVVRSGGRAQASYLLR 130
           PG+G+P +V    R  AS +LR
Sbjct: 867 PGSGLPLIVNENTRLSASAMLR 888


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,749
Number of Sequences: 5004
Number of extensions: 52892
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)