Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_P06
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...    29   0.58 
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    28   1.0  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    27   2.3  
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    26   4.1  
SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.4  
SPACUNK4.15 |||2',3'-cyclic-nucleotide 3'-phosphodiesterase |Sch...    25   9.5  

>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +2

Query: 461 VGNLAVIKQCDISGMAGGGRADSLCCNTIYGH 556
           VG LAV    D+ G  G G A  LC  TIYG+
Sbjct: 428 VGALAVAS--DLLGALGSGTAVLLCTTTIYGY 457


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 324 NSQLQNLFPSLSIVLYPFPCIQIPYNSIIYSVNVVSL 434
           N++L +L  +  ++  P P   +PYN II++  V++L
Sbjct: 468 NTKLCSLRTAALLMFIPTPDFSMPYNVIIFTSTVIAL 504


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = -2

Query: 495 ISHCLITARFP---TELAIS-FQQAVTLHLRSIL 406
           + HC++ ARFP    EL+IS FQ  V L   + L
Sbjct: 545 LGHCIVKARFPLGNKELSISLFQACVLLQFNNCL 578


>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 476 RQDSQRNLQYHFSKQ*HYIYGVYYTIIRDLNTR 378
           R D+ R L  HFS + H  Y +   I RDL  +
Sbjct: 199 RLDNDRRLADHFSGKMHLGYAMLRNIARDLRAQ 231


>SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 516 PPPAIPLISHCLITARFPTELAISFQQAVTLHLRSI 409
           PP   PL+   LITA+  T  A+ F  +  LHL S+
Sbjct: 174 PPMIAPLLPGGLITAQLLTPCAVQF-ISTPLHLLSL 208


>SPACUNK4.15 |||2',3'-cyclic-nucleotide 3'-phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 208

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 330 QLQNLFPSLSIVLYPFPCIQIPYNSIIYSVNVVS 431
           +LQN    L+    PF  I+ PY  +IY+ ++ S
Sbjct: 128 ELQNAAYDLADTSDPFNVIEHPYMPVIYAKSICS 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,463,451
Number of Sequences: 5004
Number of extensions: 46114
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)