Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_P06
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0188 + 7617838-7620231,7621856-7622071,7622167-7622328,762...    29   3.2  
02_02_0242 + 8209317-8209467,8209905-8209957,8210152-8210163,821...    28   5.6  
07_03_0081 - 13203140-13203822,13204979-13205045                       28   7.4  
01_03_0129 + 12831947-12832048,12832358-12832414,12832514-128327...    28   7.4  
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    27   9.8  
01_06_1637 - 38805609-38805719,38805872-38806017,38806115-388062...    27   9.8  

>02_02_0188 +
           7617838-7620231,7621856-7622071,7622167-7622328,
           7622466-7622516,7622936-7623070,7623161-7623184,
           7623341-7623452,7623776-7623901,7624004-7624053,
           7624339-7624497,7624582-7624677,7624751-7624866,
           7624907-7624984,7624985-7625108,7625193-7625306,
           7625423-7625503,7625616-7625756,7625834-7625848
          Length = 1397

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
 Frame = -1

Query: 547 YGITAEGVCASPSRHTAN----IALLDNGKIPNGTCNI-ISASSDTT 422
           YGI +EG C+ PSR++ +       LDN + PN  C++ I  S D T
Sbjct: 339 YGICSEGQCSCPSRNSGDEDQFFRQLDN-RQPNMGCSLAIPLSCDLT 384


>02_02_0242 +
           8209317-8209467,8209905-8209957,8210152-8210163,
           8210863-8210949,8212293-8212442,8212600-8212791
          Length = 214

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 555 CPYMVLQQRESARPPPAIPLISHCLITARFPTELAI 448
           CP +V   R+ ARPPP I    + +++   P   A+
Sbjct: 165 CPTLVAGDRQPARPPPGIAASVNVVLSRANPLPRAV 200


>07_03_0081 - 13203140-13203822,13204979-13205045
          Length = 249

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 23/56 (41%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
 Frame = +2

Query: 422 CSVTAC*NDI-ASSVGNLAV------IKQCDISGMAGGGRADSLCCNTIYGHKTSC 568
           CS  AC  DI AS    LAV      +  C  SG    GR D LCC   YG    C
Sbjct: 154 CSAVACAADIDASCPAELAVKGAGGAVVGCK-SGCLAFGR-DDLCCRGAYGTPDKC 207


>01_03_0129 +
           12831947-12832048,12832358-12832414,12832514-12832717,
           12832799-12832858,12835026-12835152,12835801-12835889
          Length = 212

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 57  CFSRLAVTAGRLIF-ILSHLHLTNFVSRFFFTRIM 158
           CF  +   AG L F ILS L +TNFV  F  T ++
Sbjct: 46  CFFHVLFKAGALAFYILSALFVTNFVIIFVITVLL 80


>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
            34512493-34513964,34514114-34514377,34514761-34514978,
            34515759-34516030,34516190-34516559,34516578-34516797,
            34516819-34518931,34518941-34519193,34519269-34519401,
            34520597-34521114,34521207-34522115,34522195-34522368,
            34522833-34522882,34523963-34524035,34524413-34524477,
            34524736-34525522,34525622-34525878,34525989-34526109,
            34526315-34526956
          Length = 5320

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 363  LCLGLETNFVAASWQQSKMHLD*FIASTEHKA 268
            LCLGL T+    +  QS  H+D  +    HKA
Sbjct: 983  LCLGLRTSVSIDTIIQSARHIDSLVHKDHHKA 1014


>01_06_1637 -
           38805609-38805719,38805872-38806017,38806115-38806220,
           38806347-38806424,38806682-38806735,38806997-38807075,
           38807136-38807260,38807441-38807530,38807635-38807714,
           38807837-38807963,38808076-38808158,38808309-38808438
          Length = 402

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 470 LAVIKQCDISGMAGGGRADSLCCNTIY 550
           LA  KQ  +SG + GG A  L CN  Y
Sbjct: 165 LATAKQAILSGCSAGGLAALLHCNDFY 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,032,621
Number of Sequences: 37544
Number of extensions: 288869
Number of successful extensions: 739
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)