Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_P06
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000261-8|AAB52929.1|  376|Caenorhabditis elegans T box family ...    32   0.31 
Z46266-3|CAA86413.1|  156|Caenorhabditis elegans Hypothetical pr...    32   0.41 
Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z48795-5|CAA88729.1|  337|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AL132898-1|CAC14405.1|  357|Caenorhabditis elegans Hypothetical ...    27   8.7  
AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AF000261-8|AAB52929.1|  376|Caenorhabditis elegans T box family
           protein 18 protein.
          Length = 376

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 7/43 (16%)
 Frame = -2

Query: 567 HEVLCPYMVLQQ-------RESARPPPAIPLISHCLITARFPT 460
           H+VLC Y +  Q       R S+  PP++P +S  L+++ FPT
Sbjct: 22  HKVLCNYFITLQSAMQSTSRPSSSSPPSLPAVSSELLSSSFPT 64


>Z46266-3|CAA86413.1|  156|Caenorhabditis elegans Hypothetical
           protein C07B5.6 protein.
          Length = 156

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = -3

Query: 443 FSKQ*HYIYGVYYTIIRDLNTRERVQ 366
           F K  +YI GVYYT+++  +TR+RV+
Sbjct: 92  FKKYGYYIDGVYYTMVKKGSTRQRVK 117


>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical
           protein T24B8.7b protein.
          Length = 2923

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +3

Query: 18  HCVEQVHRPAIGICFSRLAVTAGRLIFILSHLHLTNFVSRFFFTRIMYVFFP 173
           H +EQ +     +  +RL +T   +  +L+   + NF ++FF   + Y+  P
Sbjct: 256 HAIEQFYIAITPMLCARLTITPSSVKTVLAIDEMFNFRNKFFIQGVQYIDLP 307


>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical
           protein T24B8.7a protein.
          Length = 2920

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +3

Query: 18  HCVEQVHRPAIGICFSRLAVTAGRLIFILSHLHLTNFVSRFFFTRIMYVFFP 173
           H +EQ +     +  +RL +T   +  +L+   + NF ++FF   + Y+  P
Sbjct: 256 HAIEQFYIAITPMLCARLTITPSSVKTVLAIDEMFNFRNKFFIQGVQYIDLP 307


>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical
           protein T24B8.7b protein.
          Length = 2923

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +3

Query: 18  HCVEQVHRPAIGICFSRLAVTAGRLIFILSHLHLTNFVSRFFFTRIMYVFFP 173
           H +EQ +     +  +RL +T   +  +L+   + NF ++FF   + Y+  P
Sbjct: 256 HAIEQFYIAITPMLCARLTITPSSVKTVLAIDEMFNFRNKFFIQGVQYIDLP 307


>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical
           protein T24B8.7a protein.
          Length = 2920

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +3

Query: 18  HCVEQVHRPAIGICFSRLAVTAGRLIFILSHLHLTNFVSRFFFTRIMYVFFP 173
           H +EQ +     +  +RL +T   +  +L+   + NF ++FF   + Y+  P
Sbjct: 256 HAIEQFYIAITPMLCARLTITPSSVKTVLAIDEMFNFRNKFFIQGVQYIDLP 307


>Z48795-5|CAA88729.1|  337|Caenorhabditis elegans Hypothetical
           protein R05H5.6 protein.
          Length = 337

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 8/16 (50%), Positives = 15/16 (93%)
 Frame = +1

Query: 271 LVFRRCYKSIKMHLGL 318
           L+F RCY+++K+H+G+
Sbjct: 125 LIFARCYENVKLHIGV 140


>AL132898-1|CAC14405.1|  357|Caenorhabditis elegans Hypothetical
           protein Y59A8B.2 protein.
          Length = 357

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +2

Query: 197 INRLL----IFGIRLRSMSMSVSTLIQNALCSVDAINQSRCILDCC 322
           +NRLL    +  IR  +   S +T  +N + SV+  + S C LD C
Sbjct: 169 VNRLLGSITVSEIRCLTCGASSATFEENTIISVEIPSNSSCSLDMC 214


>AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical
           protein F02E11.1 protein.
          Length = 567

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 345 FPSLSIVLYPFPCIQIPYNSIIYSVNVVSLLAEMILQVP-LGILPLSSNAILAVWREG 515
           FPS++++    P     + S IYSV     LA+ + ++P   ILP+    I+  W  G
Sbjct: 353 FPSVNVITSELPVFLREHKSNIYSVEAY-FLAKSLAELPQYTILPMIYGTII-YWMAG 408


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,882,479
Number of Sequences: 27780
Number of extensions: 265050
Number of successful extensions: 597
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)