Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_P05
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   178   5e-46
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   178   5e-46
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    27   2.2  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   3.9  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    26   3.9  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    26   5.1  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   6.8  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   9.0  
SPBC337.15c |coq7||ubiquinone biosynthesis protein Coq7|Schizosa...    25   9.0  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    25   9.0  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  178 bits (434), Expect = 5e-46
 Identities = 82/127 (64%), Positives = 91/127 (71%)
 Frame = +1

Query: 160 FVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTH 339
           FVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTH
Sbjct: 26  FVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTH 85

Query: 340 RSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIE 519
           RSGQ AFGNMCR GRMFAPTK WR+WH                          ARGH IE
Sbjct: 86  RSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIE 145

Query: 520 KIPELPL 540
           +IPE+PL
Sbjct: 146 EIPEVPL 152


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  178 bits (434), Expect = 5e-46
 Identities = 82/127 (64%), Positives = 91/127 (71%)
 Frame = +1

Query: 160 FVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTH 339
           FVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTH
Sbjct: 26  FVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTH 85

Query: 340 RSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIE 519
           RSGQ AFGNMCR GRMFAPTK WR+WH                          ARGH IE
Sbjct: 86  RSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIE 145

Query: 520 KIPELPL 540
           +IPE+PL
Sbjct: 146 EIPEVPL 152


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 195  DQVRTYGRLEYEXGGAWLXPCTVSLFSEYTDTK 97
            D  +TY  +E E  G +    T   FSEY D K
Sbjct: 905  DLAKTYFFIEDEGDGTYKFKLTYGAFSEYLDVK 937


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 107 PTLKVGLPIDSFRYFSEAIPPEIYTNSGDKDHPP 6
           P+L  GLP  + R   + + PE Y +S  ++  P
Sbjct: 22  PSLTSGLPSGNVRILQKGMEPEDYLSSASQNEVP 55


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = -1

Query: 552 SATTQGKLGNLFNNVSSSLNERWDASSS 469
           SAT+  +L ++F+N+SSS++   DASS+
Sbjct: 670 SATSNSQLSSIFSNLSSSIS---DASSN 694


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 508 HIIEKIPELPLGCSRQSPGDQQDQTGCH 591
           H++EK+ E+ + C R       ++  CH
Sbjct: 264 HLLEKLTEVNVMCDRHMDAISSEELACH 291


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 515  LKRFPSFPWVVAD 553
            L ++P FPWV+AD
Sbjct: 1947 LTQYPVFPWVIAD 1959


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 135 CTVSLFSEYTDTKGRATDRLISLL 64
           C V ++SEYT   G ++  L++L+
Sbjct: 492 CVVKIWSEYTKNTGESSPVLVALV 515


>SPBC337.15c |coq7||ubiquinone biosynthesis protein
           Coq7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 227 EFLDIET*TSLTRSGRMGALNTXREGLGCXPAPSHSSLNTPTLKVG 90
           EF +I +  +  R   +  LNT  EG     AP+H+ L T  +++G
Sbjct: 161 EFKEIRSHLAEFRDDELEHLNTAVEGWNAKEAPAHALL-TNAIQMG 205


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
 Frame = -2

Query: 167 NTXREGLGCXPAPSH---SSLNTPTLKVGLPIDSFRYFSEAIPPEIYTNSGDKDHP 9
           N   E +    APS    S LNTPT    L     RY  +   P+      +K HP
Sbjct: 263 NKVEEAIVSSSAPSSGVSSVLNTPTRPHALSTPRIRYGPQPTDPQFGITWHEKLHP 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,243
Number of Sequences: 5004
Number of extensions: 47092
Number of successful extensions: 149
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)