Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_P03
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    89   2e-19
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    26   2.6  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    24   7.9  
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    24   7.9  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    24   7.9  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 89.0 bits (211), Expect = 2e-19
 Identities = 47/107 (43%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
 Frame = +1

Query: 46  MVNVPKQRRTYXXXXXXXXXXXX--SQYKKSKVKARCPGXEDVMIVNSRXYGGQSKPIFX 219
           MVN+PK R+TY              +QYKK        G        S  +GGQ+KP+F 
Sbjct: 1   MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQS-GFGGQTKPVFH 59

Query: 220 XXXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 360
                   +VLRLEC  CK ++Q+ LKRCKHFELGG+KK KG  IQF
Sbjct: 60  KKAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELGGEKKTKGAAIQF 106


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 143 AFTLDFLYCDTLCTLWHL 90
           A  L +LY DTL + WHL
Sbjct: 683 AILLHYLYTDTLLSPWHL 700


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -3

Query: 294 CNL*SHLAIST--LKTEHNFLSGFCLLFEDGFGLTTV 190
           C+   HL  S    K E   L G CL   DG+ LT++
Sbjct: 443 CSTAPHLTCSADAQKKECQALGGTCLYKRDGYYLTSI 479


>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 110 LCTLWHLHFLQYVLRCFGTFTIFE 39
           L TL+H   + + + C G F +F+
Sbjct: 75  LLTLFHFPIIGFFVECLGFFNLFK 98


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 194 VVSPNPSSKRRQKPLRKLCSVLS 262
           V SPNP S +R+K  R+  S+ S
Sbjct: 276 VSSPNPPSAKREKKKRRKSSMSS 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,484,082
Number of Sequences: 5004
Number of extensions: 24333
Number of successful extensions: 71
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)