Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_P03
         (407 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical pr...    92   2e-19
AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal...    92   2e-19
AC084197-30|AAK68595.1|  303|Caenorhabditis elegans Exosome (mul...    31   0.24 
Z78064-8|CAO82042.1|  357|Caenorhabditis elegans Hypothetical pr...    28   3.0  
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a...    28   3.0  
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p...    27   6.9  
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p...    27   6.9  
L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AF036701-1|AAB88368.2|  332|Caenorhabditis elegans Kinase, glh-b...    27   6.9  
U64859-9|AAC69090.1|  378|Caenorhabditis elegans Activated in bl...    26   9.1  
U64859-8|AAC69096.1|  378|Caenorhabditis elegans Prion-like-(q/n...    26   9.1  

>Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical
           protein C09H10.2 protein.
          Length = 105

 Score = 91.9 bits (218), Expect = 2e-19
 Identities = 49/106 (46%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
 Frame = +1

Query: 46  MVNVPKQRRTYXXXXXXXXXXXX-SQYKKSKVKARCPGXEDVMIVNSRXYGGQSKPIFXX 222
           MVNVPK RRT+             +QYKK K      G        S  +GGQ+KPIF  
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQS-GFGGQTKPIFRK 59

Query: 223 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 360
                  IVLR+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 60  KAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105


>AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal
           protein L44 L41 protein.
          Length = 105

 Score = 91.9 bits (218), Expect = 2e-19
 Identities = 49/106 (46%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
 Frame = +1

Query: 46  MVNVPKQRRTYXXXXXXXXXXXX-SQYKKSKVKARCPGXEDVMIVNSRXYGGQSKPIFXX 222
           MVNVPK RRT+             +QYKK K      G        S  +GGQ+KPIF  
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQS-GFGGQTKPIFRK 59

Query: 223 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 360
                  IVLR+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 60  KAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105


>AC084197-30|AAK68595.1|  303|Caenorhabditis elegans Exosome
           (multiexonuclease complex)component protein 2 protein.
          Length = 303

 Score = 31.5 bits (68), Expect = 0.24
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 120 VQKVQGKGTLPRXRR--RYDRKQQGLRWSVQTHLQKEGKNH 236
           VQ+VQ  GTL    R  +Y + QQG+   V  HL K+ K H
Sbjct: 151 VQQVQHDGTLMLHTRNNKYGKLQQGILIKVPPHLIKKSKKH 191


>Z78064-8|CAO82042.1|  357|Caenorhabditis elegans Hypothetical
           protein F57B1.9a protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 115 IPCVLCGIYIFCSTSCAVLVRSPFLSSFGTDIKQ 14
           IPC++ GIYI  +    ++ +S   SS  T +KQ
Sbjct: 233 IPCIIFGIYIALTIKIMIMKQSSLKSSEITILKQ 266


>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 168 protein.
          Length = 1347

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 30   PNELKNGERTKTAQDVLQKM*MPQSTQGITVQKVQGKGTL 149
            P+ L+NG R     D + +     STQG   Q   G+G++
Sbjct: 1071 PHSLQNGPRNTYGMDQMTQQMSHMSTQGSMAQGSMGQGSM 1110


>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
           protein F52C9.1a protein.
          Length = 1336

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 134 LDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFE 39
           ++ + C+T   L    FL +V  C+GT T  +
Sbjct: 736 IELIQCETSVKLLDRRFLMHVSICYGTHTFLD 767


>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
           protein F52C9.1b protein.
          Length = 1331

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 134 LDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFE 39
           ++ + C+T   L    FL +V  C+GT T  +
Sbjct: 736 IELIQCETSVKLLDRRFLMHVSICYGTHTFLD 767


>L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical
           protein F44E2.3 protein.
          Length = 244

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 250 LRLECADCKVRSQVALKRCKHFELGGDKK 336
           + +E A+CK R + + K+CK  E   ++K
Sbjct: 152 MAVELAECKKRDEESRKKCKQLEAELERK 180


>AF036701-1|AAB88368.2|  332|Caenorhabditis elegans Kinase,
           glh-binding protein 2 protein.
          Length = 332

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 137 TLDFLYCDTLCTLWHLHFLQYVLR 66
           TL FL   +LC + HLH L ++ R
Sbjct: 131 TLSFLVYQSLCAIKHLHNLGFIHR 154


>U64859-9|AAC69090.1|  378|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 9 protein.
          Length = 378

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -2

Query: 331 CHHQAQSACISSMQPVISPCNQHTQ 257
           C  Q QS C+   QPV S C    Q
Sbjct: 137 CQQQCQSTCVQQQQPV-SQCQPQCQ 160


>U64859-8|AAC69096.1|  378|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 57
           protein.
          Length = 378

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -2

Query: 331 CHHQAQSACISSMQPVISPCNQHTQ 257
           C  Q QS C+   QPV S C    Q
Sbjct: 137 CQQQCQSTCVQQQQPV-SQCQPQCQ 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,519,085
Number of Sequences: 27780
Number of extensions: 147501
Number of successful extensions: 478
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)