Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_P03
         (407 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   5.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   5.4  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   7.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   9.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   9.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   9.4  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 191 TVVSPNPSSKRRQKPLR 241
           TVVSP P+ +R  K ++
Sbjct: 900 TVVSPPPTKRRTMKVVK 916


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 191 TVVSPNPSSKRRQKPLR 241
           TVVSP P+ +R  K ++
Sbjct: 938 TVVSPPPTKRRTMKVVK 954


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 206 LD*PP*XLLFTIITSSXPGQRAFTLDFLYCDTLCTLWHLHFLQYVL 69
           L+ P    +F +  S   G   +T+D LY  T    W LH ++ ++
Sbjct: 246 LEKPTDKRMFVLAASIKAG---YTIDRLYELTKIDKWFLHKMKNII 288


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -3

Query: 240 LSGFCLLF 217
           +SGFCLLF
Sbjct: 450 VSGFCLLF 457


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -3

Query: 240 LSGFCLLF 217
           +SGFCLLF
Sbjct: 503 VSGFCLLF 510


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 216 EDGFGLTTVXPAVYDHNV 163
           E+G G+TT  P +Y  ++
Sbjct: 4   EEGLGVTTGQPNLYKQDL 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,564
Number of Sequences: 438
Number of extensions: 1765
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)