Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_O23
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 109 3e-25
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 105 4e-24
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 95 1e-20
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 92 6e-20
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 91 2e-19
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 83 3e-17
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 82 6e-17
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 78 1e-15
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 77 2e-15
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 73 3e-14
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 71 1e-13
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 70 3e-13
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 50 2e-07
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 33 0.027
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 28 1.3
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 27 3.1
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc... 27 3.1
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 26 4.1
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 26 4.1
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 4.1
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 26 4.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 5.4
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 25 7.2
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 109 bits (263), Expect = 3e-25
Identities = 54/145 (37%), Positives = 85/145 (58%), Gaps = 8/145 (5%)
Frame = +3
Query: 225 AATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAE 401
+++RRL KE +D+R+ + R VD+ N+ W + P + Y G F + FP +
Sbjct: 7 SSSRRLTKEYSDLREHPIPDIRVNLVDD-NLFHWACTALGPSDSVYAGGKFHFSLKFPLD 65
Query: 402 YPFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHP 581
YPF+PP I F T+IYHPN D +G VCL I+ + +KP+ K V++ ++ L+ +P P+ P
Sbjct: 66 YPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDP 125
Query: 582 LRAELAEE-------FSKIGRNFKE 635
L A +AE+ F KI R++ E
Sbjct: 126 LVASIAEQYRNDRPSFDKIARDYVE 150
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 105 bits (253), Expect = 4e-24
Identities = 49/128 (38%), Positives = 78/128 (60%), Gaps = 1/128 (0%)
Frame = +3
Query: 228 ATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEY 404
A +R+ +EL D+ + S V + ++ WQ I+ P + PY G F + I+FP +Y
Sbjct: 2 ALKRINRELADLGKDPPSSCSAGPVGD-DLFHWQATIMGPADSPYAGGVFFLSIHFPTDY 60
Query: 405 PFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPL 584
PFKPPK++F T+IYHPNI+ G +CL I+ + W PA +V+ ++ +L+ DP P+ PL
Sbjct: 61 PFKPPKVNFTTRIYHPNINSNGSICLDIL-RDQWSPALTISKVLLSICSLLTDPNPDDPL 119
Query: 585 RAELAEEF 608
E+A +
Sbjct: 120 VPEIAHVY 127
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 94.7 bits (225), Expect = 1e-20
Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 1/131 (0%)
Frame = +3
Query: 225 AATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIVPDNPPYNKGA-FRIEINFPAE 401
+ T+RL+ EL + S +SN+L W G I + Y +G F+I ++FPA
Sbjct: 28 SVTKRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPAN 87
Query: 402 YPFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHP 581
YP+ PP I F + ++HPN+D G +CL I+ + W ++ +L +L+ +P P
Sbjct: 88 YPYSPPTIIFTSPMWHPNVDMSGNICLDILK-DKWSAVYNVQTILLSLQSLLGEPNNASP 146
Query: 582 LRAELAEEFSK 614
L A+ AE +SK
Sbjct: 147 LNAQAAELWSK 157
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 92.3 bits (219), Expect = 6e-20
Identities = 43/150 (28%), Positives = 85/150 (56%), Gaps = 13/150 (8%)
Frame = +3
Query: 225 AATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAE 401
A+ + L+K+L +I+++ + F VD+ +I W+ +I+ P++ Y G F ++FP +
Sbjct: 5 ASEQLLRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQD 64
Query: 402 YPFKPPKISFKTKIYHPNIDEKGQVCLPII------------SAENWKPATKTDQVIQAL 545
YP PPK+ F T+I+HPN+ G+VC+ I+ + E W P + ++ ++
Sbjct: 65 YPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISV 124
Query: 546 VALVNDPEPEHPLRAELAEEFSKIGRNFKE 635
+++++ P E P + A+EF + + FK+
Sbjct: 125 ISMLSSPNDESPANIDAAKEFRENPQEFKK 154
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 90.6 bits (215), Expect = 2e-19
Identities = 44/128 (34%), Positives = 76/128 (59%), Gaps = 2/128 (1%)
Frame = +3
Query: 231 TRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEYP 407
+RR+ KEL D++Q + +++ +I +G+ P+ PY G F ++I P +YP
Sbjct: 6 SRRIAKELADVQQDKQAGIQVWTIND-DISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYP 64
Query: 408 FKPPKISFKTKIYHPNI-DEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPL 584
F+PPK++F TKIYHPN+ + G +CL I+ + W P + +L +L+ PEP +P
Sbjct: 65 FRPPKMNFDTKIYHPNVSSQTGAICLDILK-DQWSPVYTMKSALISLQSLLCTPEPSNPQ 123
Query: 585 RAELAEEF 608
A++A+ +
Sbjct: 124 DAQVAQVY 131
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 83.0 bits (196), Expect = 3e-17
Identities = 37/126 (29%), Positives = 68/126 (53%), Gaps = 1/126 (0%)
Frame = +3
Query: 228 ATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEY 404
A RRL ++ ++Q V + N++ W +I+ P + P+ G F++ ++F +Y
Sbjct: 5 ARRRLMRDFKRMQQDPPAGVSASPVSD-NVMLWNAVIIGPADTPFEDGTFKLVLSFDEQY 63
Query: 405 PFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPL 584
P KPP + F + ++HPN+ G++CL I+ W P ++ ++ +L+NDP P
Sbjct: 64 PNKPPLVKFVSTMFHPNVYANGELCLDILQ-NRWSPTYDVAAILTSIQSLLNDPNNASPA 122
Query: 585 RAELAE 602
AE A+
Sbjct: 123 NAEAAQ 128
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 82.2 bits (194), Expect = 6e-17
Identities = 34/87 (39%), Positives = 53/87 (60%)
Frame = +3
Query: 342 PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATK 521
P Y G F +E+ P EYP PP + F TKIYHPN+D+ G++CL + ++W PA +
Sbjct: 41 PQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLK-KDWSPALQ 99
Query: 522 TDQVIQALVALVNDPEPEHPLRAELAE 602
V+ ++ AL+ P P+ PL ++A+
Sbjct: 100 IRTVLLSIQALMGAPNPDDPLDNDVAK 126
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 78.2 bits (184), Expect = 1e-15
Identities = 44/131 (33%), Positives = 62/131 (47%)
Frame = +3
Query: 237 RLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIVPDNPPYNKGAFRIEINFPAEYPFKP 416
R+QK++ D+ S + N+L + I PD Y G F+ I YP P
Sbjct: 27 RIQKDVTDLEIPSTMSTSWPDPIKLNVLHLE--IRPDEGYYKGGKFKFRIQIDDNYPHDP 84
Query: 417 PKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPLRAEL 596
PK+ KIYHPNID +G VCL I+ ++W P + ++ L L P E PL E
Sbjct: 85 PKVKCLNKIYHPNIDIEGNVCLNIL-RQDWNPVLNLNSILVGLQFLFLSPNAEDPLNKEA 143
Query: 597 AEEFSKIGRNF 629
A + K + F
Sbjct: 144 AADLHKDPQGF 154
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 77.4 bits (182), Expect = 2e-15
Identities = 36/129 (27%), Positives = 67/129 (51%), Gaps = 13/129 (10%)
Frame = +3
Query: 228 ATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEY 404
A RRL KE ++ ++G +E + TW LI PD P+ G + + FP++Y
Sbjct: 6 ALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDY 65
Query: 405 PFKPPKISFKTKIYHPNIDEKGQVCLPII------------SAENWKPATKTDQVIQALV 548
P PP + F+ + +HPN+ + G VC+ I+ S+E W P ++++ +++
Sbjct: 66 PLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVM 125
Query: 549 ALVNDPEPE 575
+++ +P E
Sbjct: 126 SMLAEPNDE 134
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 73.3 bits (172), Expect = 3e-14
Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Frame = +3
Query: 312 NILTWQGLIVPDNPP--YNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLP 485
+++ W+ + +P P + G +++ + FP EYP +PPK F ++HPN+ G VCL
Sbjct: 37 DLMNWK-VGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLS 95
Query: 486 IIS-AENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFSK 614
I++ E WKPA Q++ + L++DP P + E F K
Sbjct: 96 ILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKK 139
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 70.9 bits (166), Expect = 1e-13
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Frame = +3
Query: 342 PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDE-KGQVCLPIISAENWKPAT 518
P PY+ G +++ + P+EYP+K P I F +I+HPNIDE G VCL +I+ + W P
Sbjct: 39 PSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVIN-QTWSPMF 97
Query: 519 KTDQVIQA-LVALVNDPEPEHPLRAELA 599
+ + L L+ P PL E A
Sbjct: 98 DMINIFEVFLPQLLRYPNASDPLNGEAA 125
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 69.7 bits (163), Expect = 3e-13
Identities = 36/129 (27%), Positives = 67/129 (51%), Gaps = 3/129 (2%)
Frame = +3
Query: 225 AATRRLQKELNDIRQSGLKSFRDIQ-VDESNILTWQGLIV-PDNPPYNKGAFRIEINFPA 398
++ +RL KE + + ++ V + ++ W+ +I P PY G + ++I+
Sbjct: 3 SSIKRLHKEYASFQAGDISGLLLLKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHE 62
Query: 399 EYPFKPPKISFKTKIYHPNID-EKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPE 575
YP PP + F+TKI HPNI G+VC+ I+ +W PA A+++L+++ +
Sbjct: 63 GYPISPPSVYFQTKIVHPNISWTNGEVCMDILKT-HWSPAWSLQSACLAIISLLSNYDAS 121
Query: 576 HPLRAELAE 602
PL + A+
Sbjct: 122 SPLNVDAAK 130
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 50.4 bits (115), Expect = 2e-07
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Frame = +3
Query: 228 ATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEY 404
A +RL KE ++++ ++ D + NIL W +I P + PY G + + FP +Y
Sbjct: 6 AYKRLMKEYLALQKNPVELV-DAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDY 64
Query: 405 PFKPPKISFKTKIYHPNIDEKGQVCLPI--ISAENWKPATKTDQVIQALVALVNDPE 569
PFKPP I T ++CL ++W P+ ++ LV+ + E
Sbjct: 65 PFKPPAIRMITP--SGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFMTSDE 119
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 33.5 bits (73), Expect = 0.027
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +3
Query: 303 DESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNID-EKGQV 476
D+ + W I+ P + + + ++I+ A YP PP ++F ++I P +D E G+V
Sbjct: 34 DDITLSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINLPGVDGETGKV 93
>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 128
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 467 LFINVRVVNLCFETNFRGFEWVFCW 393
LF+N V +C+ N+ GF + FCW
Sbjct: 41 LFLNYVVDIVCYVKNYNGFSF-FCW 64
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 26.6 bits (56), Expect = 3.1
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Frame = +3
Query: 231 TRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIVPDNPP--YNKGAFRIEINFPAEY 404
++ + ELN+ S K + + ES++ QG + +NPP N G + F +
Sbjct: 2 SQTINSELNENATSQCKEDLKVSLSESDLRDSQGQLGIENPPKCNNSGNHSDNLGFIEQS 61
Query: 405 PFKPPKISFKTKIYHPNI-DEKGQVCLPIISAENWKPATKTDQVI 536
P+ K P++ D K LPI + + K A + ++
Sbjct: 62 ETVHPE---NEKALTPDLRDTKIHTSLPITTPFSKKRAREAKNIL 103
>SPAC22E12.16c |pik1||phosphatidylinositol kinase
Pik1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 26.6 bits (56), Expect = 3.1
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Frame = -3
Query: 389 VNLNAESTFVVRWVVWNN*TLPC*DVG-LINLYVSERLQARL-----SDVIKFFL*SSRC 228
V NA+ ++ V+ NN T+PC G + + +R Q +L D + + + C
Sbjct: 774 VRKNADQIILLVEVMQNNSTMPCFRAGENTSAQLLQRFQLQLGDKECDDFVDLLIQKANC 833
Query: 227 SHCTKFAKMSQNI 189
S T+ + QNI
Sbjct: 834 SVWTRLYDLFQNI 846
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +3
Query: 309 SNILTWQGLIVPDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQ 473
S++ T + LI P PP K E E F+P + ++ I P +D + +
Sbjct: 566 SSMQTIESLIHPRFPPLQKHLSPSEFENTFESRFEPVSLENQSHISPPQVDSQSE 620
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 426 SFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVI 536
S + I+H N D+ V A +W+ A KTD V+
Sbjct: 460 SMEAPIFHVNGDDVEAVTFICQLAADWRKAFKTDVVV 496
>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 488
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 435 TKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVN 560
T + HP+ D + CL +I NW+ + + +A++A +N
Sbjct: 101 TGLEHPSTDVE-IFCLHLIRRANWEKKEIGEPLFEAIMACIN 141
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -1
Query: 442 IFVLKLIFGG--LNGYSAGKLISMRKAPLL*GGLSGTIRPC 326
+ VL+++ G LN +S+ KLI PLL G +R C
Sbjct: 450 LLVLQMLCGAHVLNKFSSLKLIMTHVIPLLPGSYQDLVRRC 490
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 5.4
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +3
Query: 183 LWNILGHFSKFCTMAATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIVPD 347
LWN+L FSKF A+ + + ++ F + V NI W VPD
Sbjct: 2313 LWNLLNQFSKFLIEIASAN-SNIVYKLSYDVIRHFLKLVVLWKNIYVWTN--VPD 2364
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +3
Query: 246 KELNDIRQSGLKSFRDIQVDESNILTWQGL 335
K+L++ +++ L + I++DE +L WQGL
Sbjct: 50 KQLSESKEAYLDA---IKIDEKAVLAWQGL 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,676,386
Number of Sequences: 5004
Number of extensions: 57098
Number of successful extensions: 158
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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