Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_O21
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    28   0.85 
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    26   4.5  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   4.5  
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    25   6.0  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    25   6.0  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   7.9  

>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 28.3 bits (60), Expect = 0.85
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 195 KRQKKYDIKHLIISTTKFGFVFQEKLILRSLQMDKT 302
           KR + YD+  L +STTK  +  ++  I+R L +  T
Sbjct: 231 KRGRIYDVLSLEVSTTKLAYYVRKPNIVRDLDLVNT 266


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 22  FCHFMMKFSFKFNLFDSFRLNAPNI*SVRIRHDF 123
           FCHF+   +F F+   S   NA     VR+R  F
Sbjct: 689 FCHFLKSMNFDFDASSSAAFNAS---MVRLRSTF 719


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -1

Query: 454  DKSKSYKFSGSVILCVNSLIPLLLKSIAVISLANSRVVIGFVRPFFLH 311
            D SKS   SGS +L + +L  L+ K+++++ +    V+    +P  LH
Sbjct: 4511 DDSKSMSESGSTVLALETL-ALVTKALSLLEVGQIAVMKFGEQPELLH 4557


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 5/121 (4%)
 Frame = +3

Query: 72  FSLKRA*YLKCSYKA*LSVSYFKSLP-HMDHIR----FSYQINQ*KKRQKKYDIKHLIIS 236
           ++  RA +++C   A L  SYF S P  +D+ +     S Q +Q   RQ + + K     
Sbjct: 99  YASSRAAFVRCVTLAKLDESYFASTPEELDYQQIMKSLSKQEDQSPLRQDELERKE-YNE 157

Query: 237 TTKFGFVFQEKLILRSLQMDKTDKKCKKNGLTKPITTLELAKDITAIDLSNKGISELTHN 416
           + +     +  L+ R + M   DK  K     K  T   L   I +ID     +S+   N
Sbjct: 158 SMQSSVTHKRPLVTRGVAMSIDDKALKALSDLKSSTENNLV--ILSIDKEVISLSQEKQN 215

Query: 417 I 419
           I
Sbjct: 216 I 216


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 460 LFDKSKSYKFSGSVILCVNSLIPLLLKSIAVI 365
           L D ++    SGSV+LC+N  I +   S+ ++
Sbjct: 30  LADSAEPTPLSGSVVLCLNEAISVKAISLKLV 61


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 89  LIFKVFV*GMTFGILFQITSAYG 157
           L+F  F  GMT  IL+Q+T  YG
Sbjct: 727 LVFLTFT-GMTLFILYQLTFPYG 748


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,995,323
Number of Sequences: 5004
Number of extensions: 35213
Number of successful extensions: 73
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)