Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_O21
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0448 + 17692650-17692970,17693461-17693811                       27   8.1  
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365...    27   8.1  

>09_04_0448 + 17692650-17692970,17693461-17693811
          Length = 223

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
 Frame = +2

Query: 224 FDHFYYKIWLRFSREA-----YPSFVTNGQNRQKM*EE 322
           FD    + W RF+ E      YP F+T G+ ++K+  E
Sbjct: 92  FDRAQARFWARFAEEKCNAALYPIFMTTGEEQRKLVHE 129


>07_03_0111 +
           13535912-13535972,13536081-13536142,13536418-13536510,
           13537577-13537649,13537876-13538265,13538337-13538404,
           13539334-13539375,13540211-13540735,13540817-13540974,
           13541078-13541636,13542438-13542500,13542579-13542680,
           13542779-13543096,13543175-13543267,13543489-13543590,
           13543678-13543782,13544190-13544323,13545097-13545280,
           13545701-13545832,13546215-13546327,13546468-13546558,
           13547138-13549339
          Length = 1889

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = +3

Query: 291 MDKTDKKCKKNGLTKPITTLELAKDITAIDLSNKGIS 401
           +DK+ K+ K  GL KP+  L+ +K+   +D+++KG S
Sbjct: 582 VDKSAKETKIEGLGKPLKALKHSKN--NVDVADKGSS 616


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,424,170
Number of Sequences: 37544
Number of extensions: 181724
Number of successful extensions: 326
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)