Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_O16
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14710-4|AAK84537.3| 526|Caenorhabditis elegans Hypothetical pr... 45 4e-05
L14710-1|AAL06038.1| 289|Caenorhabditis elegans Hypothetical pr... 45 4e-05
AJ001262-1|CAA04636.1| 231|Caenorhabditis elegans putative NIPS... 39 0.002
Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z54269-1|CAA91022.2| 815|Caenorhabditis elegans Hypothetical pr... 28 4.6
AC024779-1|AAP86615.1| 304|Caenorhabditis elegans Serpentine re... 27 6.0
L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical pr... 27 8.0
AF003146-5|AAB54199.1| 299|Caenorhabditis elegans Hypothetical ... 27 8.0
>L14710-4|AAK84537.3| 526|Caenorhabditis elegans Hypothetical
protein K02D10.1a protein.
Length = 526
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Frame = +1
Query: 205 GWFSKLLV-RRIEPT---KESHSRMLSDKEVIYALHTHNIRPDSVDNYLKNYKQH 357
GW S+LL + ++P+ K+SHS +LS+ E++Y THN RP D YL + ++
Sbjct: 282 GWISRLLKGQSMDPSSWQKQSHSSLLSNSELMYEFMTHNYRPGEQDAYLDAFGKY 336
Score = 32.7 bits (71), Expect = 0.16
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +2
Query: 380 KQNLGCELVGSWTVSVG-DMDQALHLFKYVGGLKN 481
++N ELVGSWT + G DQA+HL+++ G ++
Sbjct: 342 QKNPSIELVGSWTCAYGRTRDQAIHLWRHNKGYED 376
>L14710-1|AAL06038.1| 289|Caenorhabditis elegans Hypothetical
protein K02D10.1b protein.
Length = 289
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Frame = +1
Query: 205 GWFSKLLV-RRIEPT---KESHSRMLSDKEVIYALHTHNIRPDSVDNYLKNYKQH 357
GW S+LL + ++P+ K+SHS +LS+ E++Y THN RP D YL + ++
Sbjct: 45 GWISRLLKGQSMDPSSWQKQSHSSLLSNSELMYEFMTHNYRPGEQDAYLDAFGKY 99
Score = 32.7 bits (71), Expect = 0.16
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +2
Query: 380 KQNLGCELVGSWTVSVG-DMDQALHLFKYVGGLKN 481
++N ELVGSWT + G DQA+HL+++ G ++
Sbjct: 105 QKNPSIELVGSWTCAYGRTRDQAIHLWRHNKGYED 139
>AJ001262-1|CAA04636.1| 231|Caenorhabditis elegans putative NIPSNAP
protein protein.
Length = 231
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 247 KESHSRMLSDKEVIYALHTHNIRPDSVDNYLKNYKQH 357
K+SHS +LS+ E++Y THN RP D YL + ++
Sbjct: 5 KQSHSSLLSNSELMYEFMTHNYRPGEQDAYLDAFGKY 41
Score = 32.7 bits (71), Expect = 0.16
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +2
Query: 380 KQNLGCELVGSWTVSVG-DMDQALHLFKYVGGLKN 481
++N ELVGSWT + G DQA+HL+++ G ++
Sbjct: 47 QKNPSIELVGSWTCAYGRTRDQAIHLWRHNKGYED 81
>Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical
protein C09G5.8 protein.
Length = 1531
Score = 28.3 bits (60), Expect = 3.4
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +1
Query: 214 SKLLVRRIEPTKESHSRMLSDKEVIYALHTHN----IRPDSVDNYLKNYKQHVDLIHSH 378
SK+ RIE K SHS E I H+ + +R D K YK+ D++HSH
Sbjct: 568 SKVEEERIEEEKISHSPPPMTFEPIRKRHSQSEISRMRRADDDLLQKLYKEVADILHSH 626
>Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical
protein C09G5.8 protein.
Length = 1531
Score = 28.3 bits (60), Expect = 3.4
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +1
Query: 214 SKLLVRRIEPTKESHSRMLSDKEVIYALHTHN----IRPDSVDNYLKNYKQHVDLIHSH 378
SK+ RIE K SHS E I H+ + +R D K YK+ D++HSH
Sbjct: 568 SKVEEERIEEEKISHSPPPMTFEPIRKRHSQSEISRMRRADDDLLQKLYKEVADILHSH 626
>Z54269-1|CAA91022.2| 815|Caenorhabditis elegans Hypothetical
protein F02C12.1 protein.
Length = 815
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 193 NTDDGWFSKLLVRRIEPTKESHSRMLSDKEVIYALHTHNI 312
NT+ + + +E K+ H ML+DK V +H H++
Sbjct: 579 NTEGQQGNSKMKANLETIKDIHKAMLADKHVEAHIHEHDV 618
>AC024779-1|AAP86615.1| 304|Caenorhabditis elegans Serpentine
receptor, class x protein50, isoform b protein.
Length = 304
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 184 ALLNTDDGWFSKLLVRRIEPTKESHSRMLSDKEVIYALHT 303
AL+ W LL+RR+ K S R+ + + + A+H+
Sbjct: 7 ALIGVMANWTVALLIRRLPSLKNSFGRLTASQSIGDAIHS 46
>L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical
protein F09G8.3 protein.
Length = 392
Score = 27.1 bits (57), Expect = 8.0
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +1
Query: 322 SVDNYLKNYKQHVDLIHSHKAE 387
+++ YLK+ +QHV ++ H+AE
Sbjct: 34 ALETYLKHSQQHVAMMEKHRAE 55
>AF003146-5|AAB54199.1| 299|Caenorhabditis elegans Hypothetical
protein F56F4.2 protein.
Length = 299
Score = 27.1 bits (57), Expect = 8.0
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -2
Query: 221 NFENHPSSVFNSALVDIXXGI 159
N+E +P VFN+ +D+ G+
Sbjct: 95 NYEKYPKKVFNAGTIDLENGV 115
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,830,092
Number of Sequences: 27780
Number of extensions: 210794
Number of successful extensions: 539
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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