Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_O14
(605 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856 135 2e-32
11_06_0394 - 23084485-23084577,23084677-23084802,23085134-230852... 133 9e-32
08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323 111 3e-25
09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341 107 7e-24
06_01_0539 + 3869156-3869908 105 2e-23
06_01_0529 + 3831100-3831852 105 2e-23
03_01_0568 - 4192514-4192606,4192694-4192753,4192837-4192932,419... 104 6e-23
05_05_0306 - 23977543-23977614,23977709-23977799,23978296-239783... 102 2e-22
01_06_1091 + 34464923-34465026,34465124-34465163,34465245-344653... 88 4e-18
02_05_0057 + 25472872-25472912,25473012-25473157,25474008-254740... 83 2e-16
06_01_0479 + 3419657-3420337 74 1e-13
03_03_0187 + 15253000-15253207,15253281-15253370,15254338-152544... 71 9e-13
03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871 38 0.005
06_01_0387 - 2770387-2770514,2770963-2771063,2771152-2771255,277... 31 0.54
07_03_1738 - 29141829-29141989,29142112-29142343,29142751-291427... 31 0.94
01_06_1048 + 34108360-34109895 29 2.9
01_06_1043 + 34078015-34079541 29 2.9
11_04_0325 + 16395124-16396794 28 5.0
01_06_1042 + 34068086-34069294,34069331-34069615 28 5.0
02_01_0726 + 5440341-5440661,5441574-5441620,5442917-5442977,544... 28 6.6
>02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856
Length = 272
Score = 135 bits (327), Expect = 2e-32
Identities = 71/155 (45%), Positives = 99/155 (63%), Gaps = 27/155 (17%)
Frame = +2
Query: 179 MEAVKLGSATIGLKNKDYAVLIALKRAVSELSAYQKKIIPIDEHIGISISGLTADARMLS 358
MEAVK GSA +GL+++ +AVL A +A SELS++Q+K+ + +H G++++GLTAD R+LS
Sbjct: 1 MEAVKQGSACVGLRSRTHAVLAAANKAASELSSHQRKVFRVADHAGVALAGLTADGRVLS 60
Query: 359 RYMRTECLNHRYSHDAPMPVGRLISSVGNKMQ---------IC----------------- 460
R++R+EC+NH + +DAP+PV RL + +K Q IC
Sbjct: 61 RFLRSECINHAFVYDAPLPVSRLALRLADKAQPDMYIFGITICPTTFLWIMSVSLMVLQV 120
Query: 461 -TQRYDKRPLGVGLLVAGYDDQGPHIYQTCPSANY 562
TQR KRP GVGLLVAG D+ G H+Y CPS NY
Sbjct: 121 CTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNY 155
>11_06_0394 -
23084485-23084577,23084677-23084802,23085134-23085236,
23085895-23085953,23086418-23086519,23086601-23086714,
23087666-23087746,23088073-23088154,23088504-23088556
Length = 270
Score = 133 bits (322), Expect = 9e-32
Identities = 72/154 (46%), Positives = 94/154 (61%), Gaps = 5/154 (3%)
Frame = +2
Query: 116 QYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEL--SAYQKK 289
+YD V +SP+GRL QVEYA+EA+KLGS IGLK KD VL KR S L + +K
Sbjct: 20 EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLEPSSVEK 79
Query: 290 IIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPV---GRLISSVGNKMQIC 460
I+ IDEHIG ++SGL ADAR L + R E NHR+S+ PM V + I + +
Sbjct: 80 IMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLALRFGEG 139
Query: 461 TQRYDKRPLGVGLLVAGYDDQGPHIYQTCPSANY 562
+ RP GV LL+AG+D+ GP +Y T PS +
Sbjct: 140 DEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTF 173
>08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323
Length = 319
Score = 111 bits (268), Expect = 3e-25
Identities = 59/153 (38%), Positives = 89/153 (58%), Gaps = 4/153 (2%)
Frame = +2
Query: 116 QYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEL--SAYQKK 289
+YD +TV+SP G L QVEYA+EAV+ G+A +G++ D VL K++ +L S +K
Sbjct: 73 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSMRK 132
Query: 290 IIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQR 469
I +D HI ++ +GL ADAR+L R EC +HR + + P+ V + + Q TQ
Sbjct: 133 IASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQS 192
Query: 470 YDKRPLGVGLLVAGYD--DQGPHIYQTCPSANY 562
RP G+ L+ G+D + P +YQT PS +
Sbjct: 193 GGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTF 225
>09_06_0102 + 20870346-20870518,20870599-20871013,20872180-20872341
Length = 249
Score = 107 bits (257), Expect = 7e-24
Identities = 58/153 (37%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
Frame = +2
Query: 116 QYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEL--SAYQKK 289
+YD +TV+SP G L QVEYA+EAV+ G+A +G++ D VL K++ +L S +K
Sbjct: 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGSDTVVLGVEKKSTPKLQDSRSVRK 62
Query: 290 IIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQR 469
I +D HI ++ +GL ADAR+L R EC +HR + + + V + + Q TQ
Sbjct: 63 IASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYTQS 122
Query: 470 YDKRPLGVGLLVAGYD--DQGPHIYQTCPSANY 562
RP G+ L+ G+D P +YQT PS +
Sbjct: 123 GGVRPFGLSTLIVGFDPYTDKPALYQTDPSGTF 155
>06_01_0539 + 3869156-3869908
Length = 250
Score = 105 bits (253), Expect = 2e-23
Identities = 57/153 (37%), Positives = 88/153 (57%), Gaps = 4/153 (2%)
Frame = +2
Query: 116 QYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEL---SAYQK 286
+YDS T++SP+GRL+QVEYAMEA+ + +G+ D VL+ K+ S+L S +
Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAE 63
Query: 287 KIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQ 466
K+ ID H+ +++G+ +DA +L R + S+ P+PV +L+ S+ + Q TQ
Sbjct: 64 KMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQ 123
Query: 467 RYDKRPLGVGLLVAGYD-DQGPHIYQTCPSANY 562
RP GV L AG+D G +Y + PS NY
Sbjct: 124 FGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNY 156
>06_01_0529 + 3831100-3831852
Length = 250
Score = 105 bits (253), Expect = 2e-23
Identities = 57/153 (37%), Positives = 88/153 (57%), Gaps = 4/153 (2%)
Frame = +2
Query: 116 QYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSEL---SAYQK 286
+YDS T++SP+GRL+QVEYAMEA+ + +G+ D VL+ K+ S+L S +
Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAE 63
Query: 287 KIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQ 466
K+ ID H+ +++G+ +DA +L R + S+ P+PV +L+ S+ + Q TQ
Sbjct: 64 KMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQ 123
Query: 467 RYDKRPLGVGLLVAGYD-DQGPHIYQTCPSANY 562
RP GV L AG+D G +Y + PS NY
Sbjct: 124 FGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNY 156
>03_01_0568 -
4192514-4192606,4192694-4192753,4192837-4192932,
4193088-4193170,4193289-4193347,4193463-4193559,
4194151-4194232,4194353-4194447,4194585-4194660
Length = 246
Score = 104 bits (249), Expect = 6e-23
Identities = 56/152 (36%), Positives = 88/152 (57%), Gaps = 4/152 (2%)
Frame = +2
Query: 119 YDSDVTVWSPQGRLHQVEYAMEAVK-LGSATIGLKNKDYAVLIALKRAVSELSAYQK--K 289
YD +T++SP+GRL+QVEYA +AVK G +IG++ KD ++ K+ +L +
Sbjct: 9 YDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTH 68
Query: 290 IIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQR 469
+ PI ++IG+ +GLTADAR L R E R+ MPV L + +K Q+ TQ
Sbjct: 69 LFPITKYIGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVYTQH 128
Query: 470 YDKRPLGVGLLVAGYDDQ-GPHIYQTCPSANY 562
RPLGV +V GYD++ +++ P+ ++
Sbjct: 129 AYMRPLGVVAMVLGYDEEKNAQLFKCDPAGHF 160
>05_05_0306 -
23977543-23977614,23977709-23977799,23978296-23978361,
23978399-23978479,23979130-23979176,23979408-23979492,
23979570-23979656,23979728-23979801,23980083-23980166,
23980259-23980298,23980386-23980489
Length = 276
Score = 102 bits (245), Expect = 2e-22
Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 2/147 (1%)
Frame = +2
Query: 119 YDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSE--LSAYQKKI 292
YD VT +SP GR+ QVEYA +AV +G+K KD VL K S+ L +++
Sbjct: 8 YDLSVTTFSPDGRVFQVEYAGKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMILKGSNRRL 67
Query: 293 IPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRY 472
+ H G++++GL AD R + ++E ++ + PMPV L V + + +CT +
Sbjct: 68 HSVHRHSGLAVAGLAADGRQIVSRAKSEAASYEKVYGEPMPVKELADRVASYVHLCTLYW 127
Query: 473 DKRPLGVGLLVAGYDDQGPHIYQTCPS 553
RP G G+++ GYD GP +Y PS
Sbjct: 128 WLRPFGCGVILGGYDRDGPQLYMIEPS 154
>01_06_1091 +
34464923-34465026,34465124-34465163,34465245-34465328,
34465457-34465480,34465582-34465655,34465726-34465812,
34465922-34466006,34466215-34466261,34467048-34467113,
34468307-34468397,34468477-34468548
Length = 257
Score = 88.2 bits (209), Expect = 4e-18
Identities = 52/155 (33%), Positives = 78/155 (50%), Gaps = 10/155 (6%)
Frame = +2
Query: 119 YDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKDYAVLIALKRAVSE--LSAYQKKI 292
YD VT +SP GR+ QVEYA +AV +G+K KD VL K S+ L ++I
Sbjct: 8 YDLSVTTFSPDGRVFQVEYATKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMMLEGSNRRI 67
Query: 293 IPIDEHIGISI--------SGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNK 448
+ H G+ I +GL AD R + ++E ++ + P+ V L V +
Sbjct: 68 HSVHWHSGLDIILINVMAVAGLAADGRQIVSRAKSEAASYEKVYGEPISVKELADRVASY 127
Query: 449 MQICTQRYDKRPLGVGLLVAGYDDQGPHIYQTCPS 553
+ +CT + RP G G+++ GYD GP +Y PS
Sbjct: 128 VHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPS 162
>02_05_0057 +
25472872-25472912,25473012-25473157,25474008-25474072,
25474182-25474228,25474922-25474997,25475176-25475243,
25475862-25475931,25476178-25476263,25476418-25476480,
25476556-25476621,25476740-25476788
Length = 258
Score = 82.6 bits (195), Expect = 2e-16
Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 25/175 (14%)
Frame = +2
Query: 113 NQYDSDVTVWSPQGRLHQVEYAMEAVKLGSATIGLKNKD---------YAVLIALK---R 256
+QY +T +SP G+L Q+E+A+ AV G ++G+K Y V+ K
Sbjct: 4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKGASREAIPSLYFYCVMRIEKGRGA 63
Query: 257 AVSELSAYQKKI--IPIDE-----------HIGISISGLTADARMLSRYMRTECLNHRYS 397
A + A +KK+ I +DE +IG+ SG+ D R+L R R + +
Sbjct: 64 ANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRL 123
Query: 398 HDAPMPVGRLISSVGNKMQICTQRYDKRPLGVGLLVAGYDDQGPHIYQTCPSANY 562
+ +PV +L+ MQ TQ RP GV LL+AGYDD GP +YQ PS +Y
Sbjct: 124 YKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSY 178
>06_01_0479 + 3419657-3420337
Length = 226
Score = 73.7 bits (173), Expect = 1e-13
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 4/132 (3%)
Frame = +2
Query: 179 MEAVKLGSATIGLKNKDYAVLIALKRAVSEL---SAYQKKIIPIDEHIGISISGLTADAR 349
MEA+ + +G+ D VL+ K+ S+L S +K+ ID H+ +++G+ +DA
Sbjct: 1 MEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDAN 60
Query: 350 MLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPLGVGLLVAGYD-DQG 526
+L R + S+ P+PV +L+ S+ + Q TQ RP GV L AG+D G
Sbjct: 61 ILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHG 120
Query: 527 PHIYQTCPSANY 562
+Y + PS NY
Sbjct: 121 FQLYMSDPSGNY 132
>03_03_0187 +
15253000-15253207,15253281-15253370,15254338-15254402,
15254489-15254535,15255195-15255270,15255432-15255499,
15255793-15255862,15256024-15256109,15256328-15256390,
15256472-15256537,15256938-15256986
Length = 295
Score = 70.5 bits (165), Expect = 9e-13
Identities = 36/93 (38%), Positives = 51/93 (54%)
Frame = +2
Query: 284 KKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSHDAPMPVGRLISSVGNKMQICT 463
+KI + +IG+ SG+ D R+L R R + + + +PV +L+ MQ T
Sbjct: 123 QKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFT 182
Query: 464 QRYDKRPLGVGLLVAGYDDQGPHIYQTCPSANY 562
Q RP GV LL+AGYDD GP +YQ PS +Y
Sbjct: 183 QSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSY 215
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
Frame = +2
Query: 125 SDVTVW------SPQGRLHQVEYAMEAVKLGSATIGLK 220
SD VW SP G+L Q+E+A+ AV G ++G+K
Sbjct: 32 SDALVWLPFRCCSPSGKLVQIEHALTAVGSGQTSLGIK 69
>03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871
Length = 212
Score = 38.3 bits (85), Expect = 0.005
Identities = 26/114 (22%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Frame = +2
Query: 209 IGLKNKDYAVLIALKRAVSELSAY---QKKIIPIDEHIGISISGLTADARMLSRYMRTEC 379
IG+ +D+AV+ A AV + + + K++ +D H + SG D + +++
Sbjct: 5 IGVVGRDFAVVAADTSAVQSILVHKTDEDKVMVLDSHKLMGASGEPGDRVQFTEFIQKNL 64
Query: 380 LNHRYSHDAPMPVGRLISSVGNKMQICTQRYDKRPLGVGLLVAGYD-DQGPHIY 538
+++ ++ P+ + ++ + K P V +L+AGYD D G +Y
Sbjct: 65 HLYQFRNNIPLSTAATANFTRGELATALR---KNPYYVNVLLAGYDSDVGASLY 115
>06_01_0387 -
2770387-2770514,2770963-2771063,2771152-2771255,
2771345-2771507,2771550-2771596,2772818-2772946
Length = 223
Score = 31.5 bits (68), Expect = 0.54
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Frame = +2
Query: 257 AVSELSAYQKKIIPIDEHIGISISGL-TADARMLSRYMRTECLNHRYSHDAPMPVGRLIS 433
A ++L A + P DE + I G+ T +R L +C H ++ R IS
Sbjct: 28 AGADLPAMELPTCPADEVLLIVNFGIGTWASRELKVGYAFQCRLHELANK------RRIS 81
Query: 434 SVGNKMQICTQRYDKRPLG--VGLLVAGYDDQGPHIY 538
G + Y R +G +G ++AG+D++GP +Y
Sbjct: 82 IAGASKLLANILYSYRGMGLSIGTMIAGWDEKGPGLY 118
>07_03_1738 -
29141829-29141989,29142112-29142343,29142751-29142792,
29143312-29143410,29143575-29143667,29143742-29143876,
29144251-29144290,29144475-29144844,29146575-29146650
Length = 415
Score = 30.7 bits (66), Expect = 0.94
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Frame = +2
Query: 221 NKDYAVLIALKRAVSELSAYQKKIIPIDEHIGISISGLTADARMLSRYMRTECLNHRYSH 400
NKD+ L +S L Y K P D +G S G T A ++ + + LN
Sbjct: 237 NKDFTEYTNLDECISYLCDYMVKNGPFDGLLGFS-QGATLSALLIGYQAQGKVLN----- 290
Query: 401 DAPMPVGRLISSVGNKMQ---ICTQRYDKRPLGV 493
D P P+ ++S G+K + IC Y K P+ V
Sbjct: 291 DHP-PIKFMVSIAGSKFRDPSICNVAY-KDPIKV 322
>01_06_1048 + 34108360-34109895
Length = 511
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +3
Query: 420 DVSSRQLVTKCRFVPRDTTSDPWVWACWLL 509
D S R +VT RDTTS W WLL
Sbjct: 294 DESLRDVVTNFILAGRDTTSSALTWFFWLL 323
>01_06_1043 + 34078015-34079541
Length = 508
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +3
Query: 420 DVSSRQLVTKCRFVPRDTTSDPWVWACWLL 509
D S R +VT RDTTS W WLL
Sbjct: 295 DESLRDVVTNFLIAGRDTTSTALTWFFWLL 324
>11_04_0325 + 16395124-16396794
Length = 556
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 387 TDILM-MLQCPL-DVSSRQLVTKCRFVPRDTTSDPWVWACWLLV 512
+D+L M++C D + R +V RDTTS W WLL+
Sbjct: 290 SDLLSRMIECGYPDEAIRDMVISFIMAGRDTTSSALTWFFWLLM 333
>01_06_1042 + 34068086-34069294,34069331-34069615
Length = 497
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 420 DVSSRQLVTKCRFVPRDTTSDPWVWACWLL 509
D S R +VT RDTTS W W+L
Sbjct: 296 DESLRDVVTNFLLAGRDTTSSALTWFFWVL 325
>02_01_0726 +
5440341-5440661,5441574-5441620,5442917-5442977,
5442978-5443035,5443303-5443463,5443692-5443808,
5443888-5443989,5444834-5444908,5444996-5445084,
5445171-5445220,5445562-5445641,5445744-5445953,
5446103-5446170,5446363-5446423,5446719-5447081
Length = 620
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +3
Query: 393 ILMMLQCPLDVSSRQLVTKCRFVPRDTTSDPWVWACWLLVMMTKDLIFTRLVH 551
+L+++ L++ S +L + P + T +PW C +K I L+H
Sbjct: 388 LLLIVGTKLELISTRLAQEAADCPDEATGNPWTKPCKEHFWFSKPRIVLHLIH 440
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,342,876
Number of Sequences: 37544
Number of extensions: 337367
Number of successful extensions: 928
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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