Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_O10
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   2.9  
SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   3.9  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    24   8.9  
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    24   8.9  

>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = -1

Query: 387 IAYNINKSNNLLQAVIGTTTFSGVRQLLSF*FQPTCLHFQGSLTFCEFCRRVVR 226
           + Y+ +KSN   ++ IG     G        F+  C+++       EF R V +
Sbjct: 438 LMYSADKSNQTAKSFIGVLDIYGFEHFKKNSFEQFCINYANEKLQQEFYRHVFK 491


>SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 102 TPLXRPMKFPYTFSAKV 152
           TPL  PM  PY F+ KV
Sbjct: 101 TPLPHPMLIPYLFAPKV 117


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 323 VVFGSFFPSDFSPLAYIFR 267
           + FGS FPS   PLA + R
Sbjct: 302 IKFGSHFPSKTVPLALVIR 320


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 86  ALTMSDAPGSP-HEVPLHVLSEGRSV 160
           ALT SD PG+P H++   +L+ G  V
Sbjct: 278 ALTKSDRPGTPIHKIYEQLLNNGIQV 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,589,656
Number of Sequences: 5004
Number of extensions: 30978
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)