Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_O04
         (397 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...   111   1e-25
AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical ...    35   0.018
Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical pr...    27   3.7  
AF078790-14|AAC26930.1|  335|Caenorhabditis elegans Hypothetical...    27   3.7  
AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine re...    27   3.7  
AC024776-7|AAK68469.1|  411|Caenorhabditis elegans Nuclear pore ...    27   3.7  
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ...    27   3.7  
U97017-3|AAB52360.1|  199|Caenorhabditis elegans Hypothetical pr...    27   4.9  
U97017-2|AAB52359.1|  281|Caenorhabditis elegans Hypothetical pr...    27   4.9  
U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical p...    27   4.9  
Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical pr...    27   6.4  
U88172-8|AAB42258.1|  312|Caenorhabditis elegans Hypothetical pr...    27   6.4  
U88172-4|AAB42259.1|  224|Caenorhabditis elegans Hypothetical pr...    27   6.4  
U41992-7|AAA83358.1|  374|Caenorhabditis elegans Hypothetical pr...    27   6.4  
AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical ...    27   6.4  
AC091124-1|AAK27878.1|  255|Caenorhabditis elegans Hypothetical ...    27   6.4  
AC006810-1|AAF59633.1|  182|Caenorhabditis elegans Hypothetical ...    27   6.4  
AL117195-21|CAB55033.2|  313|Caenorhabditis elegans Hypothetical...    26   8.5  
AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical...    26   8.5  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score =  111 bits (268), Expect = 1e-25
 Identities = 54/76 (71%), Positives = 62/76 (81%)
 Frame = +1

Query: 136 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 315
           LNN VLFD+ TY+KLYKEV  YKLITP+VVSERLKVR SLA+  L EL+ KGL+K VV H
Sbjct: 40  LNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVHH 99

Query: 316 HGQVIYTRATKGDDPV 363
           HGQV+YTRATK  D +
Sbjct: 100 HGQVVYTRATKEADVI 115


>AC024824-1|AAK85503.1|  679|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.3 protein.
          Length = 679

 Score = 35.1 bits (77), Expect = 0.018
 Identities = 16/42 (38%), Positives = 27/42 (64%)
 Frame = +3

Query: 18  KKDAKASAKQPQKTQKKKEGSXWRQSQEEEVVQRKSS*QVEQ 143
           KK++K+  K P+KT  K+E       +EEEVV++K S ++ +
Sbjct: 347 KKNSKSPKKTPKKTAVKEESEESSGDEEEEVVKKKKSSKINK 388



 Score = 27.9 bits (59), Expect = 2.8
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +3

Query: 15  PKKDAKASAKQPQKTQKKKEGSXWRQSQEEEVVQRKSS*QVEQP 146
           PKK  K   K  +K+  K+E       +EEE  +  +    E P
Sbjct: 617 PKKKGKTPRKSSKKSAAKEESEESSDDEEEEQAEETNGSHTESP 660


>Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical
           protein F55G11.9 protein.
          Length = 1431

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
 Frame = -2

Query: 204 LVLWDFLVQFLICGFIKQHLVVQLVT---NFSFGPL---LLLG-FAATXILPSSSVFFEA 46
           L +W F ++  I G +K   ++ L +      F P+   +L+G F  T  + S +VFF +
Sbjct: 233 LPIWIFYMEHFIFGVLKTTFLITLFSILWPLLFEPVSMYVLIGIFFYTFNVISFAVFFSS 292

Query: 45  VWPKPSR 25
           ++P P R
Sbjct: 293 IFPFPKR 299


>AF078790-14|AAC26930.1|  335|Caenorhabditis elegans Hypothetical
           protein F36H12.3 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 18  KKDAKASAKQPQKTQKKKEGSXWRQSQEEEVVQRKSS*QVEQP 146
           KK+ K   K+ +K ++KKE     + +EE+  ++K   +  +P
Sbjct: 176 KKEEKKEEKKEEKKEEKKEEKKEEEKKEEKKEEKKEDEKKVEP 218


>AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 65 protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 275 SMSALLAREPRTFNLSDTTAGVISLYCG 192
           S++  ++ E   F+LSDT   ++ L+CG
Sbjct: 2   SVNRTISLENGKFDLSDTIVNIVELFCG 29


>AC024776-7|AAK68469.1|  411|Caenorhabditis elegans Nuclear pore
           complex protein protein8, isoform a protein.
          Length = 411

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 284 SLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT 147
           S++S+ AL A +    NL  TTA  + LY   S    S + + NN+
Sbjct: 313 SITSIKALEASQSAALNLVATTAKGVRLYFSVSTGPQSTMAMFNNS 358


>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
           complex protein protein8, isoform b protein.
          Length = 1090

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 284 SLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT 147
           S++S+ AL A +    NL  TTA  + LY   S    S + + NN+
Sbjct: 228 SITSIKALEASQSAALNLVATTAKGVRLYFSVSTGPQSTMAMFNNS 273


>U97017-3|AAB52360.1|  199|Caenorhabditis elegans Hypothetical
           protein F47B3.5 protein.
          Length = 199

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 18  KKDAKASAKQPQKTQK-KKEGSXWRQSQEEEVVQRKSS*QVEQP 146
           K D  A +K+ +K +K K EGS   +S+++E  ++    + E P
Sbjct: 4   KPDEPAKSKKSEKKEKSKNEGSKKEESKDKEKSKKSEDKKSEDP 47


>U97017-2|AAB52359.1|  281|Caenorhabditis elegans Hypothetical
           protein F47B3.4 protein.
          Length = 281

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 18  KKDAKASAKQPQKTQK-KKEGSXWRQSQEEEVVQRKSS*QVEQP 146
           K D  A +K+ +K +K K EGS   +S+++E  ++    + E P
Sbjct: 86  KPDEPAKSKKSEKKEKSKNEGSKKEESKDKEKSKKSEDKKSEDP 129


>U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical
           protein C05D11.1 protein.
          Length = 995

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +1

Query: 142 NQVLFDKPTYEKLYKEVPQYKLITPAVVSERL-KVRGSL 255
           N +LFD+   EKL++++ +  +  P  V E+L +VR +L
Sbjct: 694 NCILFDELVLEKLHEKISKDVMKNPEAVLEKLEQVRSAL 732


>Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical
           protein F46F3.4 protein.
          Length = 769

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 235 LKVRGSLARRALIELREKGLIKQVVQHHGQVIYTR 339
           L V+GS+ + A +ELR   +  Q +  H + +Y R
Sbjct: 191 LNVQGSMLKEAQLELRNASMRAQSLNKHLEEMYRR 225


>U88172-8|AAB42258.1|  312|Caenorhabditis elegans Hypothetical
           protein ZK354.3 protein.
          Length = 312

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 18  KKDAKASAKQPQKTQKKKEGSXWRQSQEEE 107
           KKD K  AK+ +K ++KKE     + +E++
Sbjct: 241 KKDEKKEAKKEEKKEEKKEEKKEEKKEEKK 270


>U88172-4|AAB42259.1|  224|Caenorhabditis elegans Hypothetical
           protein ZK354.7 protein.
          Length = 224

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 18  KKDAKASAKQPQKTQKKKEGSXWRQSQEEEVVQRK 122
           KKD K  AK+ +K ++KKE     + +EE+  ++K
Sbjct: 161 KKDDKKEAKKEEKKEEKKEEKK-EEKKEEKKEEKK 194


>U41992-7|AAA83358.1|  374|Caenorhabditis elegans Hypothetical
           protein F32E10.6 protein.
          Length = 374

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 30  KASAKQPQKTQKKKEGSXWRQSQEEEVVQR 119
           K S K P+K+ K K+     + +EEEV ++
Sbjct: 183 KGSKKSPKKSAKSKDDDSSDEEEEEEVKEK 212


>AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical
           protein Y106G6D.3 protein.
          Length = 555

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 18  KKDAKASAKQPQKTQKKKEGSXWRQSQEEE 107
           KKD+   +K+ QK++KKK      +S  E+
Sbjct: 215 KKDSSRKSKKQQKSEKKKSAEQDNRSDPED 244


>AC091124-1|AAK27878.1|  255|Caenorhabditis elegans Hypothetical
           protein Y47A7.2 protein.
          Length = 255

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +3

Query: 3   QRCXP--KKDAKASAKQPQKTQKKKE 74
           +RC    KK+AK +A +PQK + KKE
Sbjct: 106 ERCQAILKKNAKRAAIEPQKRRSKKE 131


>AC006810-1|AAF59633.1|  182|Caenorhabditis elegans Hypothetical
           protein Y5H2B.3 protein.
          Length = 182

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +3

Query: 3   QRCXPKKDAKASAKQPQKTQKKKEGSXWRQSQEEEVVQRKSS*QVEQPGVV 155
           ++   KK+AK    + +  +KKKE    + S++ E   +K+    +Q   V
Sbjct: 102 EKSEQKKEAKEQVNKEKSEEKKKESVKRKSSEKLEAPSKKAKNSEDQENQV 152


>AL117195-21|CAB55033.2|  313|Caenorhabditis elegans Hypothetical
           protein Y57A10A.28 protein.
          Length = 313

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 314 CWTTCLMRPFSLSSMSALLAREP 246
           CW +C++  F+ S +S  L  EP
Sbjct: 62  CWLSCMLMSFAGSFLSCFLLGEP 84


>AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical
           protein Y75B8A.37 protein.
          Length = 106

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 63  SVFFEAVWPKPSR 25
           S+FF A+WPKP R
Sbjct: 71  SLFFVAIWPKPVR 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,011,259
Number of Sequences: 27780
Number of extensions: 187410
Number of successful extensions: 738
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)