Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_N10
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.1  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   4.1  
SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch...    25   7.2  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    24   9.5  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    24   9.5  

>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 195 SNKDAANPGYPTQWALNPTAYQNVDCS 275
           S+ ++ N   PT +  N T YQN+  S
Sbjct: 372 SSSNSTNSSIPTTYPSNSTTYQNITTS 398


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +3

Query: 120 YFNTPNSYVTPKKLLNHIIIQPKMYSNKDAANPGYPTQWALNPTAYQN 263
           Y   P+  V P  + N  ++ P   S  D     YP     NPTA +N
Sbjct: 290 YTPAPSITVPPNYIPNTAMMGPSYSSFGDTDPRTYPAGMGPNPTAARN 337


>SPBC19G7.13 |trf1||telomeric DNA binding factor
           Trf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 117 YYFNTPNSYVTPKKLLNHIII 179
           Y FN PN   TP++LL   +I
Sbjct: 82  YAFNQPNPIATPQQLLRTSLI 102


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 65  FVCFCVNFIFNQTMK 109
           +VCFC  FI N T K
Sbjct: 8   YVCFCCAFISNTTSK 22


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 25  MLLVLGEFRCYI 60
           MLL  G+FRCYI
Sbjct: 478 MLLATGKFRCYI 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,787,949
Number of Sequences: 5004
Number of extensions: 34668
Number of successful extensions: 65
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)