Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_N08
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    29   0.74 
SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        28   0.98 
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    28   1.3  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   1.7  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    27   3.0  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   4.0  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   4.0  
SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c...    26   5.2  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    25   6.9  

>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 318 ECRLCE--YFLLAL*RYIXGVSLLSSSLHDWCMTASCAQKYRVH 193
           +C LCE  +    L +   G+++  +   +W + + C++KYR H
Sbjct: 140 QCILCEDWFHEKCLQKTNKGIAIPDAETFEWLVCSECSEKYRDH 183


>SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 141

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 340 KMFVIFILFTCSIKSFKVLMKFFF 411
           ++F   ILFTC I+SF +L+  FF
Sbjct: 108 QIFCTSILFTCYIQSFSLLISNFF 131


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 411 WW*NVLWGHSVGATSLSIADAKLTRELFCW 500
           W  +V W  SVG T   +A A   + +F W
Sbjct: 207 WTRDVAWAPSVGLTKTYLASASQDKNVFIW 236


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 352  IFILFTCSIKSFKVLMKFFFGGRTYCGAT 438
            IF +FTC I +  ++    FGG  Y G +
Sbjct: 1278 IFEIFTCQIYAQSLIANLTFGGARYIGTS 1306


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +1

Query: 277 PLQSQKKILT*SAFFKQSLLEKMFVIFILFT 369
           PL+ +++I+T    FK+ ++E +  +F+L T
Sbjct: 333 PLKKERQIITFMGDFKRCVVESLCFLFLLLT 363


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 172  NILEGSRMHPILLRARCCHTP 234
            N  EG   HP+LLR    HTP
Sbjct: 2072 NASEGLLKHPLLLRNNLIHTP 2092


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 316  FFKQSLLEKMFVIFILFTCSIKSFKVLMKFFFGGRTYCG 432
            FFKQ  +     +F +FTC + S  +     +GG  Y G
Sbjct: 1452 FFKQ--IGSFSPLFEVFTCQVYSQAITSDLAYGGARYIG 1488


>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 349 QTFFQEGFV*RMQIM*VFSSGFVKVHXRGV 260
           ++FFQEG +   ++   FS G V +H R +
Sbjct: 163 RSFFQEGDLLVAEVQQYFSDGSVSIHTRSL 192


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +2

Query: 137 GXFDGVLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELSSDTPXMYLYKAR 292
           G   G L FD   Y  EAE        D  +H+S K E+      + +Y +R
Sbjct: 165 GYMPGRLEFDQ-EYMNEAELPIKDMNFDDDLHESAKHEMQLKLTMLNIYNSR 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,415,922
Number of Sequences: 5004
Number of extensions: 47097
Number of successful extensions: 125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)