Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_N08
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0548 - 18489728-18489871,18490185-18490556                       32   0.33 
01_06_0557 + 30219270-30219764                                         31   0.77 
08_02_1461 - 27299891-27301870                                         27   9.4  
08_01_0218 + 1743566-1745537,1746834-1747696,1748329-1748991           27   9.4  

>08_02_0548 - 18489728-18489871,18490185-18490556
          Length = 171

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 20/83 (24%), Positives = 37/83 (44%)
 Frame = -3

Query: 630 ISFKVSSIVTTAAYPSNRNASLLHGRNRQGGGTYPRGLTSGPTTSKKVLLSASRQLWTDW 451
           +S    +++ TAA+ S+ N  L HG +   GG +   L S P  + K ++  +  +  + 
Sbjct: 84  LSRSTKTMMATAAFLSDPNPPLTHGESMGFGGDFMWRLWSKPGNAGKYVVLVNMYVAREM 143

Query: 450 WHLHCGPTIRSTTKKKLHQYLKR 382
           W    G      T+ + H  + R
Sbjct: 144 WGSVAGTHEAMWTRPRAHDGICR 166


>01_06_0557 + 30219270-30219764
          Length = 164

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 79  RSALE-PIPDKFSGLQGCYIRXVRWCPSL*FCNILEGSRMHPILLR 213
           R+A+E P PD+   L G +    RW PS+  C  +EG+   P  +R
Sbjct: 19  RAAVEGPTPDQAWALLGDFCSLHRWVPSVQTCRRVEGAEGQPGCVR 64


>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 567 LLHGRNRQGGGTYPRGLTSGPTTSK 493
           LL GR R GGG + RGL   P  S+
Sbjct: 290 LLRGRRRGGGGGHRRGLFVFPLVSR 314


>08_01_0218 + 1743566-1745537,1746834-1747696,1748329-1748991
          Length = 1165

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 323 LKNADYVSIFFWLCKGTXQGCR 258
           + N DY+S   W C+ + +GC+
Sbjct: 400 ITNGDYLSAVRWFCRMSQEGCK 421


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,987,641
Number of Sequences: 37544
Number of extensions: 315342
Number of successful extensions: 803
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)