Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_N08
         (635 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M59250-1|AAA52060.1|  129|Homo sapiens COX5B protein.                  30   6.0  
M19961-1|AAA52061.1|  129|Homo sapiens COX5B protein.                  30   6.0  
CR541727-1|CAG46528.1|  129|Homo sapiens COX5B protein.                30   6.0  
BT006742-1|AAP35388.1|  129|Homo sapiens cytochrome c oxidase su...    30   6.0  
BC006229-1|AAH06229.1|  129|Homo sapiens cytochrome c oxidase su...    30   6.0  
AJ012755-1|CAA10171.1|  354|Homo sapiens TL132 protein protein.        30   6.0  
AC017099-1|AAY24279.1|  129|Homo sapiens unknown protein.              30   6.0  
CR541753-1|CAG46553.1|  129|Homo sapiens COX5B protein.                30   7.9  

>M59250-1|AAA52060.1|  129|Homo sapiens COX5B protein.
          Length = 129

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
 Frame = -1

Query: 353 ITNIFSRRL--CLKNADYVSI-FFWLCKGTXQGC-RCSAH 246
           + +I ++R+  C+   D  S+ +FWL KG  Q C RC AH
Sbjct: 80  VPSISNKRIVGCICEEDNTSVVWFWLHKGQAQRCPRCGAH 119


>M19961-1|AAA52061.1|  129|Homo sapiens COX5B protein.
          Length = 129

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
 Frame = -1

Query: 353 ITNIFSRRL--CLKNADYVSI-FFWLCKGTXQGC-RCSAH 246
           + +I ++R+  C+   D  S+ +FWL KG  Q C RC AH
Sbjct: 80  VPSISNKRIVGCICEEDNTSVVWFWLHKGQAQRCPRCGAH 119


>CR541727-1|CAG46528.1|  129|Homo sapiens COX5B protein.
          Length = 129

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
 Frame = -1

Query: 353 ITNIFSRRL--CLKNADYVSI-FFWLCKGTXQGC-RCSAH 246
           + +I ++R+  C+   D  S+ +FWL KG  Q C RC AH
Sbjct: 80  VPSISNKRIVGCICEEDNTSVVWFWLHKGEAQRCPRCGAH 119


>BT006742-1|AAP35388.1|  129|Homo sapiens cytochrome c oxidase
           subunit Vb protein.
          Length = 129

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
 Frame = -1

Query: 353 ITNIFSRRL--CLKNADYVSI-FFWLCKGTXQGC-RCSAH 246
           + +I ++R+  C+   D  S+ +FWL KG  Q C RC AH
Sbjct: 80  VPSISNKRIVGCICEEDNTSVVWFWLHKGEAQRCPRCGAH 119


>BC006229-1|AAH06229.1|  129|Homo sapiens cytochrome c oxidase
           subunit Vb protein.
          Length = 129

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
 Frame = -1

Query: 353 ITNIFSRRL--CLKNADYVSI-FFWLCKGTXQGC-RCSAH 246
           + +I ++R+  C+   D  S+ +FWL KG  Q C RC AH
Sbjct: 80  VPSISNKRIVGCICEEDNTSVVWFWLHKGEAQRCPRCGAH 119


>AJ012755-1|CAA10171.1|  354|Homo sapiens TL132 protein protein.
          Length = 354

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = +2

Query: 170 VTYSKEAECTRYFCAHDAVIHQSCKDELSSDTPXMYLYKARR 295
           VTY+K   C +++C + ++  +   DE+ +D+  +  Y+ +R
Sbjct: 278 VTYAKNPNC-KWYCYNGSICEEHHPDEIDTDSAYILFYEQQR 318


>AC017099-1|AAY24279.1|  129|Homo sapiens unknown protein.
          Length = 129

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
 Frame = -1

Query: 353 ITNIFSRRL--CLKNADYVSI-FFWLCKGTXQGC-RCSAH 246
           + +I ++R+  C+   D  S+ +FWL KG  Q C RC AH
Sbjct: 80  VPSISNKRIVGCICEEDNTSVVWFWLHKGEAQRCPRCGAH 119


>CR541753-1|CAG46553.1|  129|Homo sapiens COX5B protein.
          Length = 129

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = -1

Query: 353 ITNIFSRRL--CLKNADYVSI-FFWLCKGTXQGC-RCSAH 246
           + +I  +R+  C+   D  S+ +FWL KG  Q C RC AH
Sbjct: 80  VPSISDKRIVGCICEEDNTSVVWFWLHKGEAQRCPRCGAH 119


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,635,667
Number of Sequences: 237096
Number of extensions: 1859742
Number of successful extensions: 3509
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3509
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)