Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_N08
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   1.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.3  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              22   5.7  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 401 FISTLNDFILQVNKIKITNIFSRRLCLK 318
           F +T+N  +  +  IK  N F + +C K
Sbjct: 319 FSTTINPILYNLMSIKYRNAFKQTICCK 346


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/16 (56%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
 Frame = -1

Query: 449 GTY-TVAPQYVLPPKK 405
           GTY T+ PQ+ LPP++
Sbjct: 478 GTYPTLLPQWCLPPRE 493


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 542 AVVPTRADSQVVLPPAKKFS 483
           A+ P+    +++ PP KK+S
Sbjct: 94  ALAPSTMKIKIIAPPEKKYS 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,815
Number of Sequences: 438
Number of extensions: 3476
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)