Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_N07
(493 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18 |Schizosa... 42 4e-05
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 30 0.22
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 0.66
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 27 1.2
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch... 27 2.0
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 2.7
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 26 2.7
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch... 25 4.7
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 25 6.2
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 25 6.2
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 25 6.2
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 25 6.2
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 25 8.2
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 8.2
>SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 142
Score = 42.3 bits (95), Expect = 4e-05
Identities = 18/46 (39%), Positives = 32/46 (69%)
Frame = +2
Query: 356 IEEEVKDLLEAGKEKVVLQDLDITSLAPRKPDWDLKRDVAKKLXRL 493
IEE+ K +E + V +++LD+ +L P+KP WDL+RD+ +++ L
Sbjct: 72 IEEKTKRKIEE-QSSVPVEELDLVTLRPKKPTWDLERDLKERMRSL 116
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 29.9 bits (64), Expect = 0.22
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = -2
Query: 450 SGFLGAKLVMSRSWRTTFSLPASNKSFTSSSITVGSASLS 331
S FL + ++ S S ++ LP S + TS+ +TV S+SLS
Sbjct: 226 SSFLPSSVISSASLSSSSVLPTSIITSTSTPVTVSSSSLS 265
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.3 bits (60), Expect = 0.66
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 293 SYKPQD-EALQESKLNDAEPTVIEEEVKDLLEAGKEKVVLQDLDITS 430
SY+PQ+ +E N+ E +++E+E+ LLE G++ L ++ S
Sbjct: 15 SYEPQEINPGEEIPENEREISIVEDEIVCLLEKGEDDWYLVKRNVNS 61
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 27.5 bits (58), Expect = 1.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 243 QIILQMKQ*HCPNQNLEVTSLKMKHYKNPNL 335
++ +++ H +QN EVT +K + YKN L
Sbjct: 467 ELTAKLRAYHAASQNAEVTDVKKRGYKNYGL 497
>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 26.6 bits (56), Expect = 2.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 293 SYKPQDEALQESKLNDAEPTVIEEEVKD 376
SYK D +++ESKL D E V ++ D
Sbjct: 56 SYKFDDHSIEESKLGDFERKVFNDKNDD 83
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 2.7
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = -2
Query: 474 ATSRLRSQSGFLGAKLVMSRSWRTTFSLPASNKSFTSSSITVGSASLSLDSCNA 313
++SR S S F+ + S T P+S+ S TSS + +A+L+L++ A
Sbjct: 230 SSSRPSSSSSFI-TTMSSSTFISTVTVTPSSSSSSTSSEVPSSTAALALNASKA 282
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 26.2 bits (55), Expect = 2.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 311 EALQESKLNDAEPTVIEEEVKDLLEAGK 394
E L+ S +ND E + +EE + L+ +GK
Sbjct: 166 EQLEHSDINDEETSDFDEEFEKLVASGK 193
>SPAC17G8.11c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 4.7
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -1
Query: 472 HISFEVPVWFSRC*TCYVEILENHLFFTSLQQIFYFFFYHCWFCIIKFGFL*CFIL 305
HI VP + + + EI E + S F F+ H W GFL FI+
Sbjct: 229 HIWVMVPELYEKSHHAFFEIYEGSSWHDS-DAGFVFYMLHHWAIFTFLGFLTFFIV 283
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 25.0 bits (52), Expect = 6.2
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 278 KPKFRSYKPQDEALQESKLNDAEPTVIEEEVKDLLEAGKEKVVL 409
K +SYK +++ ES + + + +E++++ E K+KV L
Sbjct: 232 KQHVKSYKQREKTRLESNGHVSPRDMDLDEIENVFEGNKDKVAL 275
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 25.0 bits (52), Expect = 6.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 281 PKFRSYKPQDEALQESKLNDAEPTVIEEEVKDLLEAGKE 397
P F+ Y Q LQE ++ AE E+ V D+LE+ E
Sbjct: 528 PTFKIYTQQ--LLQEKTVSKAEVDAQEKRVWDILESSFE 564
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 25.0 bits (52), Expect = 6.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 350 TVIEEEVKDLLEAGKEKVVLQDLDITSLAPRK 445
T+I +KDL G + + ++D+D PR+
Sbjct: 607 TMISRRIKDLTRRGIDNIYVKDIDRPWNVPRQ 638
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 25.0 bits (52), Expect = 6.2
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -1
Query: 427 CYVEILENHLFFTSLQQIFYFFFYHCWFCIIK 332
C ++ LF L++ FY++ HC I K
Sbjct: 681 CMDQLTSLKLFINILERYFYYYDQHCESIIAK 712
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 24.6 bits (51), Expect = 8.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 416 LDITSLAPRKPDWDLKRDVAKKLXR 490
++ TSL +P W R +A KL R
Sbjct: 517 MEQTSLRSSRPSWTRSRSMASKLPR 541
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 24.6 bits (51), Expect = 8.2
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -2
Query: 477 LATSRLRSQSGFLGAKLVMSRSWRTTFSLPASNKSFTSSSITVGSASLS 331
L +S L S GF + S +FSL + N S +SSS+ S LS
Sbjct: 3510 LNSSLLSSSGGFSSSAFSTGSS---SFSLTSENGSVSSSSLVSSSPVLS 3555
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,617,422
Number of Sequences: 5004
Number of extensions: 26014
Number of successful extensions: 130
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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