Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_N04
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54281-5|CAA91047.1|  191|Caenorhabditis elegans Hypothetical pr...   139   1e-33
AC024831-7|AAY86310.1|  711|Caenorhabditis elegans Hypothetical ...    31   0.67 
AC006708-19|AAF60423.3|  588|Caenorhabditis elegans Mtm (myotubu...    31   0.88 
Z49128-4|CAA88954.1|  541|Caenorhabditis elegans Hypothetical pr...    28   4.7  

>Z54281-5|CAA91047.1|  191|Caenorhabditis elegans Hypothetical
           protein F46C5.8 protein.
          Length = 191

 Score =  139 bits (337), Expect = 1e-33
 Identities = 62/119 (52%), Positives = 85/119 (71%)
 Frame = +1

Query: 268 RKGILSQGWTRISQVYQSTLDRWTPHAKTRWVGSALVMAAFIIRIITKQGWYIVTYALGI 447
           R G+ S+ +  +   YQ  LDR TPH   RWV + + +  F  RII  QG+YIV YA+GI
Sbjct: 8   RPGVTSRFFHSLEVKYQYYLDRLTPHTAFRWVIALISLVFFASRIILLQGFYIVAYAVGI 67

Query: 448 YHLNLFIAFLTPKIDPAMDLDDDENGPALPTRASEEFRPFIRRLPEFKFWLSVTTSTXI 624
           Y+LNLF+ FLTP IDPA++ +D+++GP LP++ ++EFRPF+RRLPEFKFW S   +T I
Sbjct: 68  YYLNLFLLFLTPSIDPALEFEDEDDGPVLPSKTNDEFRPFMRRLPEFKFWHSFMKATLI 126


>AC024831-7|AAY86310.1|  711|Caenorhabditis elegans Hypothetical
           protein Y55F3C.9 protein.
          Length = 711

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 300 NIAGLSEYIRQMDPSRKDTVGWKCVGHGCIYYPHNY*TRMVYCH-ICVGYLPFKLVHC 470
           N     EY+ ++  +R   + W   G   I+YP  +  +M+  H +C+G++ F +VHC
Sbjct: 80  NFCAQREYVPRLIFNRISILIW---GSLWIFYPLIHSDKMLLIHSVCLGFIIFIVVHC 134


>AC006708-19|AAF60423.3|  588|Caenorhabditis elegans Mtm
           (myotubularin) family protein 1 protein.
          Length = 588

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = +1

Query: 370 ALVMAAFIIRIITKQGWYIVTYALGIYHLNLFIAFLTPKIDPAMDLDDDENGP---ALPT 540
           A V AA   R++ K GW I +       L +  + L  ++D   D    E  P    +PT
Sbjct: 150 ASVHAAETPRLM-KDGWKIYSAEKEYERLGIPNSRLWKEVDINKDYKFSETYPRTFVIPT 208

Query: 541 RASEEFRPFIRRLPEFK 591
            + EE +PF+++L EF+
Sbjct: 209 VSWEEGKPFVKKLGEFR 225


>Z49128-4|CAA88954.1|  541|Caenorhabditis elegans Hypothetical
           protein M03C11.4 protein.
          Length = 541

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 259 EITRKGILSQGWTRISQVYQSTLDRWTPH 345
           E T+   LSQ + R+ + YQ T+DR   H
Sbjct: 509 EETKFSTLSQNYDRLMEAYQKTIDRIEQH 537


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,214,726
Number of Sequences: 27780
Number of extensions: 303180
Number of successful extensions: 739
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)