Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_N01
(588 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 145 5e-36
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 46 5e-06
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 38 8e-04
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 35 0.010
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 29 0.50
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 27 2.7
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 25 8.2
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 25 8.2
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 145 bits (351), Expect = 5e-36
Identities = 68/97 (70%), Positives = 79/97 (81%), Gaps = 2/97 (2%)
Frame = +1
Query: 304 WDLAADKQTLQNEQPLQVARCTKIINADSNDPK--YIINVKQFAKFVVDLQDSVAPTDIE 477
WD+AAD+Q + EQPLQVARCTKII + + K Y+IN+KQ AKFVV L + V+PTDIE
Sbjct: 80 WDVAADRQRMSEEQPLQVARCTKIIENEQSAEKNAYVINLKQIAKFVVSLGERVSPTDIE 139
Query: 478 EGMRVGVDRNKYXIHIPLPPKIDPTVTMMXVEEKPDV 588
EGMRVG DRNKY I +PLPPKIDP+VTMM VEEKPDV
Sbjct: 140 EGMRVGCDRNKYAIQLPLPPKIDPSVTMMQVEEKPDV 176
Score = 66.5 bits (155), Expect = 3e-12
Identities = 29/50 (58%), Positives = 37/50 (74%)
Frame = +3
Query: 144 LDEGDIALLKSYGQGQYTKIIKEVEEGIQTVMKRVNELTGIKESDTGLAP 293
LDEGDI LLKSY G Y + + ++E + V+KR+N+ GIKESDTGLAP
Sbjct: 27 LDEGDIELLKSYATGPYARELAAIKEDTEAVLKRINDTVGIKESDTGLAP 76
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 45.6 bits (103), Expect = 5e-06
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = +1
Query: 400 KYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYXIHIPLPPKIDPTVTMMXVEEK 579
K ++ V K+VVD+ + +I+ +RV + + Y + LP K+DP V++M VE+
Sbjct: 80 KVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKI 139
Query: 580 PD 585
PD
Sbjct: 140 PD 141
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 38.3 bits (85), Expect = 8e-04
Identities = 17/63 (26%), Positives = 35/63 (55%)
Frame = +1
Query: 400 KYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYXIHIPLPPKIDPTVTMMXVEEK 579
++I+ ++VV +++V + + +G+RV +D I LP ++DP V M +E+
Sbjct: 67 RFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDP 126
Query: 580 PDV 588
D+
Sbjct: 127 GDI 129
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 34.7 bits (76), Expect = 0.010
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 457 VAPTDIEEGMRVGVDRNKYXIHIPLPPKIDPTVTMMXVEEKP 582
V P ++ G +GV+++ Y I LP + D V M V+EKP
Sbjct: 139 VEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDEKP 180
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 29.1 bits (62), Expect = 0.50
Identities = 13/54 (24%), Positives = 30/54 (55%)
Frame = +1
Query: 427 AKFVVDLQDSVAPTDIEEGMRVGVDRNKYXIHIPLPPKIDPTVTMMXVEEKPDV 588
+ +VV + ++ ++ V + R+ + LPP+ D +++M+ +E+PDV
Sbjct: 78 SNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDV 131
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 551 VGSIFGGSGMWXWYLLRSTPTLMPSSI 471
VGSI+ S ++ WYL R P++ S+
Sbjct: 1967 VGSIYTVSSVFWWYLYRMLPSVASLSL 1993
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 8.2
Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Frame = -2
Query: 578 FSSTCIMVTVGSIFGGSGMWXWYLLRSTPTLMPSSISVGATESCKSTTNFANCFTLIIYF 399
+ C+ + V +FG G + L+++T + + +G +E+C F++ F
Sbjct: 121 YGRRCVYL-VCLLFGMLGSMWFALVKTTSNSIGNQAFIGISEACAEA---LTQFSVSEVF 176
Query: 398 GSFESALMIFVH-RATCRGCSFCSVCLSAARSXQGWR 291
E + I ++ +T G + S QGWR
Sbjct: 177 FEHERGIKIGIYILSTSVGTYLGPLAAGYIASSQGWR 213
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 25.0 bits (52), Expect = 8.2
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -2
Query: 272 LFNACQFVNPLHYCLNSFFYFLDDFCVLSLAV*LQKRNI 156
L+ +C F + Y LNS FY L + + ++ + + ++ +
Sbjct: 265 LWLSCHFYYSIIYLLNSMFYLLTFYSLRAITMLIYEQTL 303
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,074,390
Number of Sequences: 5004
Number of extensions: 37596
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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