Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_M24
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   157   8e-40
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   152   2e-38
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    29   0.37 
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    25   3.4  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    25   4.5  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   4.5  
SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s...    24   7.9  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  157 bits (380), Expect = 8e-40
 Identities = 71/106 (66%), Positives = 87/106 (82%)
 Frame = +3

Query: 78  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 257
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEKLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 258 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQI 395
            IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I
Sbjct: 70  TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYI 115


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  152 bits (368), Expect = 2e-38
 Identities = 67/110 (60%), Positives = 88/110 (80%)
 Frame = +3

Query: 66  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 245
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 246 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQI 395
           R +  IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYI 114


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 28.7 bits (61), Expect = 0.37
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +3

Query: 201 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 377
           V+++R TW +LV+  +  + + N  ++ +I++    +  V+ FA H           PG
Sbjct: 89  VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 6/25 (24%), Positives = 17/25 (68%)
 Frame = -3

Query: 285 RTHQRGSRWLRQHEQPEQVFPRYDA 211
           R H++ + W ++HE+P+ +   +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -1

Query: 209 VDHMGTISTSFVDIGLHLEVNIFCPKMGGCSKHF-GDIFLVEGEHV*SSRH 60
           VD+ G I  S   I   LE+N    K GG    F G  F +  E V  + H
Sbjct: 530 VDNKGKIKISDFGISKKLELNSTSTKTGGARPSFQGSSFWMAPEVVKQTMH 580


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 169  MSTNDVLMVPM*STCVVPGKNLFWLLVL 252
            M+ N V  + +  T   PG N FW L++
Sbjct: 920  MTLNPVFQIGLNGTTHSPGNNSFWPLII 947


>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
           subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 179 FVDIGLHLEVNIFCPKMGGCSKHFGDIFLVEGEHV 75
           F  I + ++V +F PK G C +  G I LV   H+
Sbjct: 69  FSFIWVRVDVLVFSPKKGDCLE--GKINLVSPSHI 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,782,429
Number of Sequences: 5004
Number of extensions: 36820
Number of successful extensions: 63
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)