Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_M21
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   2.4  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    25   3.1  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   5.5  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    24   9.5  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    24   9.5  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    24   9.5  

>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 18/34 (52%), Positives = 20/34 (58%)
 Frame = +2

Query: 167 TILIISQVYSAPQFITFKDGKIGVNFGRLPRLEV 268
           +IL IS VYS P  ITF DG     F RL R+ V
Sbjct: 108 SILTISHVYSPPTIITF-DG-----FKRLLRMHV 135


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
 Frame = -3

Query: 379 PKSCPLAGLAH-EGVPGFSKINPPSTXHHPPLIKPPEP 269
           P   P     H  G+P    +N P      PL+ PP P
Sbjct: 257 PNVLPFTAAQHFPGMPAMPMMNVPMGPGGAPLVPPPPP 294


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 160 CYILHSASTANNSLLGRNRC 101
           CY+ HSA   +  LLG  RC
Sbjct: 485 CYVCHSALEEDCVLLGEIRC 504


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -3

Query: 385 VPPKSCPLAGLAHEGVPGFSKINPPSTXHHPPLI 284
           V  + C L  L    VP F +  PPS    P L+
Sbjct: 40  VTQQECTLEDLVPVKVPDFVRPRPPSATSLPALL 73


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 66  PFANVFQNKSRAQVSL 19
           PFAN+FQ K+  ++SL
Sbjct: 55  PFANLFQKKTDNKISL 70


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 282 FIKGGWCXVLGGFI 323
           +I  GWC  LGG I
Sbjct: 551 YINHGWCSYLGGLI 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,661,416
Number of Sequences: 5004
Number of extensions: 34337
Number of successful extensions: 79
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)