Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_M21
         (390 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    27   4.7  
Z83244-7|CAB05829.1|  318|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical p...    27   6.2  
Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical p...    27   6.2  
AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    27   6.2  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    27   6.2  
U21308-15|AAB93316.2|  412|Caenorhabditis elegans Hypothetical p...    26   8.2  

>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = -3

Query: 382 PPKSCPLAGLAH-EGVPGFSKINPPSTXHHPPLIKPPEPDFQAW*PPEVHAYLTILEGYK 206
           PP  CP   +   +  P      PP     PP+  PP P   ++ P + +A   +   Y 
Sbjct: 41  PPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMPSYSPCQSYAPAPVFNQYA 100

Query: 205 LR 200
           ++
Sbjct: 101 MQ 102


>Z83244-7|CAB05829.1|  318|Caenorhabditis elegans Hypothetical
           protein W06F12.3 protein.
          Length = 318

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +2

Query: 185 QVYSAPQFI--TFKDGKIGVNFGRLPR 259
           QVY A Q +   F+  K+G NFG  PR
Sbjct: 249 QVYHAKQLLLRNFQSRKMGQNFGTFPR 275


>Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +2

Query: 62  NGRKL-NLIQKY*CTSIPSEK*IICSRGRMKYIALLTILI--ISQVYSAPQ 205
           NG K+ N + +Y  +  PSE+ I+  RG+  +IA   ++   +S+ Y  P+
Sbjct: 72  NGSKIYNFLVEYESSDAPSEQLIMKPRGKNDFIACFELIYQHLSKDYEFPR 122


>Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +2

Query: 62  NGRKL-NLIQKY*CTSIPSEK*IICSRGRMKYIALLTILI--ISQVYSAPQ 205
           NG K+ N + +Y  +  PSE+ I+  RG+  +IA   ++   +S+ Y  P+
Sbjct: 72  NGSKIYNFLVEYESSDAPSEQLIMKPRGKNDFIACFELIYQHLSKDYEFPR 122


>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 355 LAHEGVPGFSKINPPSTXHHPPLIKPP 275
           L++ G P      PP   HHP  + PP
Sbjct: 265 LSYRGPPPHHPYGPPHPMHHPYAMMPP 291


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 355 LAHEGVPGFSKINPPSTXHHPPLIKPP 275
           L++ G P      PP   HHP  + PP
Sbjct: 265 LSYRGPPPHHPYGPPHPMHHPYAMMPP 291


>U21308-15|AAB93316.2|  412|Caenorhabditis elegans Hypothetical
           protein ZK1290.10 protein.
          Length = 412

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 316 PPSTXHHPPLIKPPEPDFQAW*PPE 242
           PPS    PP I+PPE    +  PP+
Sbjct: 97  PPSAQVAPPAIRPPEAKRTSLEPPQ 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,368,437
Number of Sequences: 27780
Number of extensions: 207430
Number of successful extensions: 479
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)