Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_M19
(588 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 221 5e-59
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 35 0.010
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 33 0.041
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 31 0.12
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 31 0.12
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 30 0.22
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.38
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 29 0.50
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 28 0.88
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 28 0.88
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 28 1.2
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 1.5
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 27 1.5
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 27 1.5
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 2.0
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 26 3.5
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 26 4.7
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 4.7
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 26 4.7
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 25 6.2
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 25 8.2
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||... 25 8.2
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 8.2
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 25 8.2
SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein ... 25 8.2
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 25 8.2
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 25 8.2
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 221 bits (541), Expect = 5e-59
Identities = 100/136 (73%), Positives = 112/136 (82%)
Frame = +1
Query: 181 RRVVLFVRMGKLCIEVTPNDKIATISEELCIGCGICVKKCPFDAITIINIPSNLEKHTTH 360
RR VR GKLCIEV P D+IA ISE LCIGCGICVKKCPF AI IIN+P+NLE TH
Sbjct: 26 RRSCPVVRTGKLCIEVNPTDRIAFISETLCIGCGICVKKCPFGAINIINLPTNLESEVTH 85
Query: 361 RYSKNSFKLHRLPIPRPXEVLXLVGQNGIGKSTALKILAGKQKPNLGRYTDPPDWQEILA 540
RYS NSFKLHRLP PRP +VL LVG NGIGKSTALKIL+GK KPNLGRY +PPDW E++
Sbjct: 86 RYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILSGKMKPNLGRYDNPPDWAEVVK 145
Query: 541 HFRXSELQNYFTKILE 588
+FR SELQN+FTK++E
Sbjct: 146 YFRGSELQNFFTKVVE 161
Score = 58.0 bits (134), Expect = 1e-09
Identities = 22/35 (62%), Positives = 30/35 (85%)
Frame = +3
Query: 108 TDKLTRIAIVNADRCKPKRCRQECKKSCPVCTYGK 212
++ LTRIAIV+ D+C+PK+CRQEC++SCPV GK
Sbjct: 2 SESLTRIAIVSEDKCRPKKCRQECRRSCPVVRTGK 36
Score = 26.2 bits (55), Expect = 3.5
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 415 EVLXLVGQNGIGKSTALKILA 477
E++ L+G+NG GK+T K +A
Sbjct: 376 EIIVLLGENGTGKTTFCKWMA 396
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 34.7 bits (76), Expect = 0.010
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +1
Query: 394 LPIPRPXEVLXLVGQNGIGKSTALKILAGKQKPNLG 501
L +P+ L LVG NG GKST LK+L+GK G
Sbjct: 25 LDLPKGSRTL-LVGANGAGKSTLLKLLSGKSLAKAG 59
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 32.7 bits (71), Expect = 0.041
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 421 LXLVGQNGIGKSTALKILAGKQKPNLG 501
+ ++G NG GKST +K+L G+ P +G
Sbjct: 703 IAVIGPNGAGKSTLIKVLTGELLPTVG 729
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 31.1 bits (67), Expect = 0.12
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +1
Query: 400 IPRPXEVLXLVGQNGIGKSTALKILAGKQKPNLGRYT-DPPDWQEI-LAHFRXS 555
+ +P +V+ LVG++G GKST ++IL N G T D D + + L+ R S
Sbjct: 606 VAQPGKVIALVGESGGGKSTIMRILLRFFDVNSGSITIDDQDIRNVTLSSLRSS 659
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 31.1 bits (67), Expect = 0.12
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 427 LVGQNGIGKSTALKILAGKQKPNLGRYTDPPD 522
++G NG GKST +K+L G+ P G+ P+
Sbjct: 724 ILGPNGAGKSTLIKVLIGEVIPQEGKVFKHPN 755
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 30.3 bits (65), Expect = 0.22
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 427 LVGQNGIGKSTALKILAGKQKPNLG 501
LVG NG GK+T +K++ K +P+ G
Sbjct: 625 LVGPNGAGKTTLIKLILEKVQPSTG 649
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.5 bits (63), Expect = 0.38
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 415 EVLXLVGQNGIGKSTALKILAG 480
E L LVG+ G GK+T +++LAG
Sbjct: 468 EPLLLVGETGTGKTTTIQLLAG 489
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 29.1 bits (62), Expect = 0.50
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 427 LVGQNGIGKSTALKILAGKQKP---NLGRYT 510
+VG+NG GKST L ++ G P N+ RY+
Sbjct: 421 IVGKNGTGKSTLLNLITGLLIPIEGNVSRYS 451
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 28.3 bits (60), Expect = 0.88
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 367 SKNSFKLHRLPIPRPXEVLXLV-GQNGIGKSTALKILAGKQKPNLGRYTDP 516
S F L L I P L +V G G GKS+ + L G+ N G Y P
Sbjct: 625 SPGDFCLRDLNIVFPRNKLSIVIGPTGSGKSSLISALLGELSLNKGSYNLP 675
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 28.3 bits (60), Expect = 0.88
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 349 HTTHRYSKN-SFKLHRLPIP-RPXEVLXLVGQNGIGKSTALKILAGKQKPNLGR 504
H + +Y ++ SF L+ + I P E + +VG+ G GKST L +P G+
Sbjct: 1230 HYSAKYREDLSFALNNINIEISPREKIGIVGRTGAGKSTLAMALFRIIEPTEGK 1283
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 256 SEELCIGCGICVKKCPFDAITI 321
+EEL +G G C+ PFD +T+
Sbjct: 239 NEELLMGYGFCLPDNPFDTVTL 260
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -2
Query: 311 ASKGHFFTQIPQPIHSSSEMVAILSLGVTSMQSFPIRTNRTTLLTFLPTSLWL 153
++ G IP P + E V S+G T+ + P+ T T+L +PT W+
Sbjct: 777 STAGTVLVDIPTPSWVT-ETVTSGSVGFTTTIATPVGTTAGTVLVDIPTPSWV 828
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -2
Query: 311 ASKGHFFTQIPQPIHSSSEMVAILSLGVTSMQSFPIRTNRTTLLTFLPTSLWL 153
++ G IP P + E V S+G T+ + P+ T T+L +PT W+
Sbjct: 885 STAGTVLVDIPTPSWVT-ETVTSGSVGFTTTIATPVGTTAGTVLVDIPTPSWV 936
Score = 27.5 bits (58), Expect = 1.5
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -2
Query: 302 GHFFTQIPQPIHSSSEMVAILSLGVTSMQSFPIRTNRTTLLTFLPTSLWL 153
G IP P + E V S+G T+ + PI T T+L +PT W+
Sbjct: 924 GTVLVDIPTPSWVT-ETVTSGSVGFTTTIATPIGTTAGTVLVDIPTPSWV 972
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -2
Query: 302 GHFFTQIPQPIHSSSEMVAILSLGVTSMQSFPIRTNRTTLLTFLPTSLWL 153
G +P P + E V S+G T+ + PI T T+L +PT W+
Sbjct: 672 GTVLVDVPTPSWIT-ETVTSGSVGFTTTIATPIGTTAGTVLVDIPTPSWV 720
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -2
Query: 302 GHFFTQIPQPIHSSSEMVAILSLGVTSMQSFPIRTNRTTLLTFLPTSLWL 153
G IP P + E V S+G T+ + P+ T T+L +PT W+
Sbjct: 960 GTVLVDIPTPSWVT-ETVTSGSVGFTTTIATPVGTTAGTVLVDIPTPSWV 1008
Score = 25.8 bits (54), Expect = 4.7
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -2
Query: 302 GHFFTQIPQPIHSSSEMVAILSLGVTSMQSFPIRTNRTTLLTFLPTSLWL 153
G IP P + E V S+G T+ + PI + T+L +PT W+
Sbjct: 708 GTVLVDIPTPSWVT-ETVTSGSIGFTTTIATPIGSTAGTVLVDVPTPSWV 756
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -2
Query: 311 ASKGHFFTQIPQPIHSSSEMVAILSLGVTSMQSFPIRTNRTTLLTFLPTSLWL 153
++ G +P P + E V S+G T+ + PI + T+L +PT W+
Sbjct: 741 STAGTVLVDVPTPSWVT-ETVTSGSVGFTTTIATPIGSTAGTVLVDIPTPSWV 792
Score = 25.4 bits (53), Expect = 6.2
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -2
Query: 302 GHFFTQIPQPIHSSSEMVAILSLGVTSMQSFPIRTNRTTLLTFLPTSLWL 153
G IP P + E V S+G T+ + P+ T T++ +PT W+
Sbjct: 816 GTVLVDIPTPSWVT-ETVTSGSVGFTTTIATPVGTTAGTVVVDVPTPSWV 864
Score = 25.0 bits (52), Expect = 8.2
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -2
Query: 302 GHFFTQIPQPIHSSSEMVAILSLGVTSMQSFPIRTNRTTLLTFLPTSLWL 153
G +P P + E V S+G T+ + PI + T+L +PT W+
Sbjct: 852 GTVVVDVPTPSWVT-ETVTSGSVGFTTTIATPIGSTAGTVLVDIPTPSWV 900
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 427 LVGQNGIGKSTALKILAGKQ 486
L G+NGIGKST L+ L+ ++
Sbjct: 213 LTGRNGIGKSTLLRALSRRE 232
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +1
Query: 289 VKKCPFDAITIINIPSNLEKHTTHRYSKNSFKLHRLPIPRPXEVLXLVGQNGIGKSTAL 465
+ K D TI IP+N H H++ +S ++ ++ + R V G +G S A+
Sbjct: 269 IAKAKIDT-TIAVIPANAFHHLVHKFPNSSAQIVQVILTRFQRVTFSTGYEYLGLSDAI 326
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.1 bits (57), Expect = 2.0
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -2
Query: 302 GHFFTQIPQPIHSSSEMVAILSLGVTSMQSFPIRTNRTTLLTFLPTSLWL 153
G IP P + E V S+G T+ + PI T T+L +PT W+
Sbjct: 715 GTVVVDIPTPSWVT-ETVTSGSVGFTTTIATPIGTTAGTVLVDIPTPSWV 763
Score = 25.4 bits (53), Expect = 6.2
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -2
Query: 311 ASKGHFFTQIPQPIHSSSEMVAILSLGVTSMQSFPIRTNRTTLLTFLPTSLWL 153
++ G IP P + E V S+G T+ + P+ + T+L +PT W+
Sbjct: 640 STAGTVVVDIPTPSWVT-ETVTSGSVGFTTTIATPVGSTAGTVLVDIPTPSWV 691
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 302 PLMLSPSSISHLTWRNTLPTVTPKTHSSSI 391
PL L PSS+ R T +TPK ++S+I
Sbjct: 142 PLKLIPSSLCGRLLRTTEVLITPKPNTSAI 171
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -2
Query: 260 SEMVAILSLGVTSMQSFPIRTNRTTLLTFLPTSLWLAAISIHNSDTS*LVG 108
S++V IL S+++ + +++ F+P L I+IH +D S L G
Sbjct: 307 SKIVGILRAPGWSLKNVEYVSKKSSYAIFIPKDKRLPFITIHKNDLSDLSG 357
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.8 bits (54), Expect = 4.7
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 349 HTTHRYSKN-SFKLHRLPIP-RPXEVLXLVGQNGIGKSTALKILAGKQKPNLG 501
H + RY +N L+ + + +P E + +VG+ G GKST L +P G
Sbjct: 1228 HYSVRYRENLPLVLNDISVNIKPQEKIGIVGRTGAGKSTLTLALFRLIEPTSG 1280
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 400 IPRPXEVLXLVGQNGIGKSTALKILAGKQKPNLG 501
+ R E+ +VG+ G+GKS+ L+ G + + G
Sbjct: 605 VARRGELCCIVGKVGMGKSSLLEACLGNMQKHSG 638
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 25.8 bits (54), Expect = 4.7
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +1
Query: 352 TTHRYSKNS-FKLHRLPIPRPXEVLXL--VGQNGIGKSTALKILAGKQKPNLGRYTDPP 519
T YSK + R + RP L + VG IGKST +IL K NLG + P
Sbjct: 22 TRRYYSKQKDISIVRQRLGRPGNHLKIGIVGMPNIGKSTLFQILT---KTNLGNPANYP 77
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 421 LXLVGQNGIGKSTALKILA 477
+ L+G NG+GKST L +A
Sbjct: 345 ISLIGVNGVGKSTTLAKIA 363
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 25.0 bits (52), Expect = 8.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 84 SRRKDHEETDKLTRIAIVNADRCKPKRCRQECKK 185
SRR ETD+ R + + +R +CRQ K+
Sbjct: 462 SRRNSKNETDEEKRKSFLERNRQAALKCRQRKKQ 495
>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
3|||Manual
Length = 264
Score = 25.0 bits (52), Expect = 8.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 194 RTTLLTFLPTSLWLAAISIHNSDTS*LVGF 105
R ++ +LP ++W+ IS+H S L+ F
Sbjct: 135 RISIDRYLPIAIWIGLISLHPKLRSYLIQF 164
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 394 LPIPRPXEVLXLVGQNGIGKSTAL 465
L + R +VL +VG+ G GK+T L
Sbjct: 502 LSVIRDNQVLIVVGETGSGKTTQL 525
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 25.0 bits (52), Expect = 8.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 358 HRYSKNSFKLHRLPIPRPXEVLXLVGQNGIGKSTALKIL 474
H YS S H L + + + G++G GK+ A K +
Sbjct: 134 HLYSIASSCYHALTTDSKNQTIIVSGESGAGKTVAAKYI 172
>SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein
Uhp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 202
Score = 25.0 bits (52), Expect = 8.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 345 ETHYPPLLQKLIQAPSPAYP 404
ET P +L+K+ AP P YP
Sbjct: 43 ETLSPEILEKMHAAPKPNYP 62
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 25.0 bits (52), Expect = 8.2
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +1
Query: 454 STALKILAGKQKPNLGRYTDPP 519
ST LK L+ QKPN YT PP
Sbjct: 286 STPLKHLSA-QKPNSNYYTGPP 306
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 25.0 bits (52), Expect = 8.2
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = +2
Query: 305 LMLSPSSISHLTWRNTLPTVTPKTHSSSIACLSQDXEK 418
L +PS SH L VTP HS S A Q K
Sbjct: 224 LFSAPSDTSHAVSPGMLTFVTPSPHSHSPAGHQQSTPK 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,462,803
Number of Sequences: 5004
Number of extensions: 49824
Number of successful extensions: 204
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -