Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_M16
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    27   1.2  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    27   2.2  
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces...    26   2.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   6.7  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.7  
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    25   6.7  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   8.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   8.8  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    25   8.8  

>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 22/97 (22%), Positives = 39/97 (40%)
 Frame = +1

Query: 82  PLRDISPALQAFRNFLLGRKHTNALRFEPLVSPRTQPPPEIPDGPSHKHAHNYYYTRDAR 261
           P ++I P+   F   +        LR E   +  + PP + P+ P+   +++  Y  +  
Sbjct: 50  PSQEIPPSDNVFDYIVFRGSDVKDLRIEEPATTPSAPPVQPPNDPAIIGSNSGQYNWNQA 109

Query: 262 REVAPPIDVTKELLSASSDKGAPKQAANVRPTPGHLY 372
           +   PP  V        +  GAP Q A     P ++Y
Sbjct: 110 QTAQPPQPV------QPNPYGAPYQQAPPAGAPYYMY 140


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 58  FKMVKAKVPLRDISPA-LQAFRNFLLGRKHTNALRFEPLVSPRTQPPPEI 204
           F  V+  +  R+I+   L  F     G+ +   LRF+P  +P T+P  E+
Sbjct: 370 FHQVEGVICDRNITLGDLIGFLEVFFGKMNVKNLRFKPAYNPYTEPSLEV 419


>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 163 EPLVSPRTQPPPEIPDGPSHK 225
           E  V+PR  PPP++P  P HK
Sbjct: 149 EGFVTPRISPPPDVPLRP-HK 168


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +1

Query: 220 HKHAHNYYYTRDARREVAPPIDVTKELLSASSDKGAPKQAANVRPT 357
           H H+H+  + R+  +E     +  K   +   D+G P Q A    T
Sbjct: 724 HGHSHSKSHDREKEKEKKKDREHRKHRETEEEDEGPPPQPARPEST 769


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 236 LWACLCEGPSGISGGG 189
           LW  LC    GI GGG
Sbjct: 179 LWLVLCRAVQGIGGGG 194


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 236 LWACLCEGPSGISGGG 189
           LW  LC    GI GGG
Sbjct: 179 LWLVLCRAVQGIGGGG 194


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 232 HNYYYTRDARREVAPPIDVTKEL-LSASSDK 321
           HNY++       V   + +TKEL LS S D+
Sbjct: 903 HNYFFAEAHASSVTGVLSITKELLLSVSIDQ 933


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +1

Query: 190 PPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVT 291
           PPP  P  P+     + YY    + E  P ID T
Sbjct: 775 PPPPPPPPPAVSAGGSRYYAPAPQAEPEPKIDET 808


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 188 SLLQKSQTDPRTSMPTTTITQETLDAKLHLQ 280
           SLL K+ ++   S PTTT T+   DA+L+ Q
Sbjct: 528 SLLYKATSNK--SRPTTTSTELKTDARLNFQ 556


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,084,538
Number of Sequences: 5004
Number of extensions: 42142
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)