Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_M16
(513 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR542266-1|CAG47062.1| 118|Homo sapiens NDUFA7 protein. 64 4e-10
CR456915-1|CAG33196.1| 118|Homo sapiens NDUFA7 protein. 64 4e-10
BC107892-1|AAI07893.1| 121|Homo sapiens NDUFA7 protein protein. 64 4e-10
BC003102-1|AAH03102.1| 113|Homo sapiens NADH dehydrogenase (ubi... 64 4e-10
AF050637-1|AAD05427.1| 113|Homo sapiens NADH-ubiquinone oxidore... 64 4e-10
BC103913-1|AAI03914.1| 546|Homo sapiens transcription elongatio... 31 1.8
BC103912-1|AAI03913.1| 544|Homo sapiens TCEB3C protein protein. 31 1.8
AB076840-1|BAC01113.1| 546|Homo sapiens transcription elongatio... 31 1.8
AK054885-1|BAB70821.1| 306|Homo sapiens protein ( Homo sapiens ... 31 2.4
BC151235-1|AAI51236.1| 718|Homo sapiens ATP-binding cassette, s... 31 3.1
BC141836-1|AAI41837.1| 693|Homo sapiens ABCB8 protein protein. 31 3.1
BC141814-1|AAI41815.1| 718|Homo sapiens ATP-binding cassette, s... 31 3.1
AK222911-1|BAD96631.1| 718|Homo sapiens ATP-binding cassette, s... 31 3.1
AK094636-1|BAC04392.1| 701|Homo sapiens protein ( Homo sapiens ... 31 3.1
AK002018-1|BAA92038.1| 735|Homo sapiens protein ( Homo sapiens ... 31 3.1
AF047690-1|AAD15748.1| 718|Homo sapiens ATP-binding cassette pr... 31 3.1
AB037721-1|BAA92538.1| 1820|Homo sapiens KIAA1300 protein protein. 30 5.5
U59464-1|AAC50550.1| 1447|Homo sapiens PATCHED protein. 29 7.2
U43148-1|AAC50496.1| 1296|Homo sapiens PTC protein. 29 7.2
BC068470-1|AAH68470.1| 711|Homo sapiens mitogen-activated prote... 29 7.2
AY395768-1|AAR21239.1| 651|Homo sapiens patched protein. 29 7.2
AL161729-2|CAH73818.1| 1296|Homo sapiens patched homolog 1 (Dros... 29 7.2
AL161729-1|CAH73817.1| 1447|Homo sapiens patched homolog 1 (Dros... 29 7.2
AB209495-1|BAD92732.1| 586|Homo sapiens patched variant protein. 29 7.2
BC047597-1|AAH47597.1| 317|Homo sapiens C10orf73 protein protein. 29 9.5
>CR542266-1|CAG47062.1| 118|Homo sapiens NDUFA7 protein.
Length = 118
Score = 63.7 bits (148), Expect = 4e-10
Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +1
Query: 106 LQAFRNFLLGRKHTNALRFE-PLVSPRTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPI 282
+Q RN+ G L+ +S RTQPPP++P GPSHK ++NYY TRD RRE PP
Sbjct: 13 IQRLRNWASGHDLQGKLQLRYQEISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPS 72
Query: 283 DVTKELLSASSDKGAPKQA 339
+ + S K A A
Sbjct: 73 IIMSSQKALVSGKPAESSA 91
>CR456915-1|CAG33196.1| 118|Homo sapiens NDUFA7 protein.
Length = 118
Score = 63.7 bits (148), Expect = 4e-10
Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +1
Query: 106 LQAFRNFLLGRKHTNALRFE-PLVSPRTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPI 282
+Q RN+ G L+ +S RTQPPP++P GPSHK ++NYY TRD RRE PP
Sbjct: 13 IQRLRNWASGHDLQGKLQLRYQEISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPS 72
Query: 283 DVTKELLSASSDKGAPKQA 339
+ + S K A A
Sbjct: 73 IIMSSQKALVSGKPAESSA 91
>BC107892-1|AAI07893.1| 121|Homo sapiens NDUFA7 protein protein.
Length = 121
Score = 63.7 bits (148), Expect = 4e-10
Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +1
Query: 106 LQAFRNFLLGRKHTNALRFE-PLVSPRTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPI 282
+Q RN+ G L+ +S RTQPPP++P GPSHK ++NYY TRD RRE PP
Sbjct: 16 IQRLRNWASGHDLQGKLQLRYQEISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPS 75
Query: 283 DVTKELLSASSDKGAPKQA 339
+ + S K A A
Sbjct: 76 IIMSSQKALVSGKPAESSA 94
>BC003102-1|AAH03102.1| 113|Homo sapiens NADH dehydrogenase
(ubiquinone) 1 alpha subcomplex, 7, 14.5kDa protein.
Length = 113
Score = 63.7 bits (148), Expect = 4e-10
Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +1
Query: 106 LQAFRNFLLGRKHTNALRFE-PLVSPRTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPI 282
+Q RN+ G L+ +S RTQPPP++P GPSHK ++NYY TRD RRE PP
Sbjct: 8 IQRLRNWASGHDLQGKLQLRYQEISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPS 67
Query: 283 DVTKELLSASSDKGAPKQA 339
+ + S K A A
Sbjct: 68 IIMSSQKALVSGKPAESSA 86
>AF050637-1|AAD05427.1| 113|Homo sapiens NADH-ubiquinone
oxidoreductase B14.5A subunit protein.
Length = 113
Score = 63.7 bits (148), Expect = 4e-10
Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +1
Query: 106 LQAFRNFLLGRKHTNALRFE-PLVSPRTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPI 282
+Q RN+ G L+ +S RTQPPP++P GPSHK ++NYY TRD RRE PP
Sbjct: 8 IQRLRNWASGHDLQGKLQLRYQEISKRTQPPPKLPVGPSHKLSNNYYCTRDGRRESVPPS 67
Query: 283 DVTKELLSASSDKGAPKQA 339
+ + S K A A
Sbjct: 68 IIMSSQKALVSGKPAESSA 86
>BC103913-1|AAI03914.1| 546|Homo sapiens transcription elongation
factor B polypeptide 3C (elongin A3) protein.
Length = 546
Score = 31.5 bits (68), Expect = 1.8
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Frame = +1
Query: 133 GRKHTNALRFEPLVSPRTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVTKE--LLS 306
GR H +A + PL+ Q P+ SH H +R A + +PP+ ++ L +
Sbjct: 194 GRGHAHAAQGGPLLGQGCQGQPQGEAVGSHSKGHKS--SRGASAQKSPPVQESQSERLQA 251
Query: 307 ASSDKGAPKQAANVRPTPGHLYA--WD 381
A +D PK P H+++ WD
Sbjct: 252 AGADSAGPK------TVPSHVFSELWD 272
>BC103912-1|AAI03913.1| 544|Homo sapiens TCEB3C protein protein.
Length = 544
Score = 31.5 bits (68), Expect = 1.8
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Frame = +1
Query: 133 GRKHTNALRFEPLVSPRTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVTKE--LLS 306
GR H +A + PL+ Q P+ SH H +R A + +PP+ ++ L +
Sbjct: 192 GRGHAHAAQGGPLLGQGCQGQPQGEAVGSHSKGHKS--SRGASAQKSPPVQESQSERLQA 249
Query: 307 ASSDKGAPKQAANVRPTPGHLYA--WD 381
A +D PK P H+++ WD
Sbjct: 250 AGADSAGPK------TVPSHVFSELWD 270
>AB076840-1|BAC01113.1| 546|Homo sapiens transcription elongation
factor Elongin A3 protein.
Length = 546
Score = 31.5 bits (68), Expect = 1.8
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Frame = +1
Query: 133 GRKHTNALRFEPLVSPRTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVTKE--LLS 306
GR H +A + PL+ Q P+ SH H +R A + +PP+ ++ L +
Sbjct: 194 GRGHAHAAQGGPLLGQGCQGQPQGEAVGSHSKGHKS--SRGASAQKSPPVQESQSERLQA 251
Query: 307 ASSDKGAPKQAANVRPTPGHLYA--WD 381
A +D PK P H+++ WD
Sbjct: 252 AGADSAGPK------TVPSHVFSELWD 272
>AK054885-1|BAB70821.1| 306|Homo sapiens protein ( Homo sapiens
cDNA FLJ30323 fis, clone BRACE2007109, highly similar to
Extensin-like protein NG5. ).
Length = 306
Score = 31.1 bits (67), Expect = 2.4
Identities = 20/75 (26%), Positives = 31/75 (41%)
Frame = +1
Query: 142 HTNALRFEPLVSPRTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVTKELLSASSDK 321
HT+ F P P P PS H H++YY + + P + SA++ +
Sbjct: 14 HTSPPPFNAPQPPAEPPAPPPQAAPSSHHHHHHYYHQSGTATL-PRLGAGGLASSAATAQ 72
Query: 322 GAPKQAANVRPTPGH 366
P +A + P P H
Sbjct: 73 RGPSSSATL-PRPPH 86
>BC151235-1|AAI51236.1| 718|Homo sapiens ATP-binding cassette,
sub-family B (MDR/TAP), member 8 protein.
Length = 718
Score = 30.7 bits (66), Expect = 3.1
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 133 GRKHTNALRFEPLVSPRT-QPPPEIPDGP-SHKH 228
G + +R + L +PRT PPP+ P+GP SH+H
Sbjct: 683 GGLYAELIRRQALDAPRTAAPPPKKPEGPRSHQH 716
>BC141836-1|AAI41837.1| 693|Homo sapiens ABCB8 protein protein.
Length = 693
Score = 30.7 bits (66), Expect = 3.1
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 133 GRKHTNALRFEPLVSPRT-QPPPEIPDGP-SHKH 228
G + +R + L +PRT PPP+ P+GP SH+H
Sbjct: 658 GGLYAELIRRQALDAPRTAAPPPKKPEGPRSHQH 691
>BC141814-1|AAI41815.1| 718|Homo sapiens ATP-binding cassette,
sub-family B (MDR/TAP), member 8 protein.
Length = 718
Score = 30.7 bits (66), Expect = 3.1
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 133 GRKHTNALRFEPLVSPRT-QPPPEIPDGP-SHKH 228
G + +R + L +PRT PPP+ P+GP SH+H
Sbjct: 683 GGLYAELIRRQALDAPRTAAPPPKKPEGPRSHQH 716
>AK222911-1|BAD96631.1| 718|Homo sapiens ATP-binding cassette,
sub-family B, member 8 variant protein.
Length = 718
Score = 30.7 bits (66), Expect = 3.1
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 133 GRKHTNALRFEPLVSPRT-QPPPEIPDGP-SHKH 228
G + +R + L +PRT PPP+ P+GP SH+H
Sbjct: 683 GGLYAELIRRQALDAPRTAAPPPKKPEGPRSHQH 716
>AK094636-1|BAC04392.1| 701|Homo sapiens protein ( Homo sapiens
cDNA FLJ37317 fis, clone BRAMY2017455, highly similar to
Homo sapiens ATP-binding cassette protein M-ABC1 mRNA.
).
Length = 701
Score = 30.7 bits (66), Expect = 3.1
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 133 GRKHTNALRFEPLVSPRT-QPPPEIPDGP-SHKH 228
G + +R + L +PRT PPP+ P+GP SH+H
Sbjct: 666 GGLYAELIRRQALDAPRTAAPPPKKPEGPRSHQH 699
>AK002018-1|BAA92038.1| 735|Homo sapiens protein ( Homo sapiens
cDNA FLJ11156 fis, clone PLACE1006956, weakly similar to
ATP-DEPENDENT PERMEASE MDL1. ).
Length = 735
Score = 30.7 bits (66), Expect = 3.1
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 133 GRKHTNALRFEPLVSPRT-QPPPEIPDGP-SHKH 228
G + +R + L +PRT PPP+ P+GP SH+H
Sbjct: 700 GGLYAELIRRQALDAPRTAAPPPKKPEGPRSHQH 733
>AF047690-1|AAD15748.1| 718|Homo sapiens ATP-binding cassette
protein M-ABC1 protein.
Length = 718
Score = 30.7 bits (66), Expect = 3.1
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 133 GRKHTNALRFEPLVSPRT-QPPPEIPDGP-SHKH 228
G + +R + L +PRT PPP+ P+GP SH+H
Sbjct: 683 GGLYAELIRRQALDAPRTAAPPPKKPEGPRSHQH 716
>AB037721-1|BAA92538.1| 1820|Homo sapiens KIAA1300 protein protein.
Length = 1820
Score = 29.9 bits (64), Expect = 5.5
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = +2
Query: 83 HYATFHLHCRLSGTSSLVGSIQMPFVLSHWFRLEPSLLQKSQTDPRTSMPTTTITQETLD 262
H + HL L TS L+GS+ P V + + K+ P+ M + TQ T+D
Sbjct: 798 HNLSLHLSQLLHSTSELLGSLSQPDVARREQNTKRDIPDKA---PQALMMDGS-TQTTVD 853
Query: 263 AKLHLQLMLPRNCLVLAQTK 322
L LP CL ++ +
Sbjct: 854 EGSQTDLTLPTLCLQTSEAE 873
>U59464-1|AAC50550.1| 1447|Homo sapiens PATCHED protein.
Length = 1447
Score = 29.5 bits (63), Expect = 7.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 226 HAHNYYYTRDARREVA-PPIDVTKELLSASS 315
H H YY T + R E++ P+ VT++ LS S
Sbjct: 671 HTHVYYTTAEPRSEISVQPVTVTQDTLSCQS 701
>U43148-1|AAC50496.1| 1296|Homo sapiens PTC protein.
Length = 1296
Score = 29.5 bits (63), Expect = 7.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 226 HAHNYYYTRDARREVA-PPIDVTKELLSASS 315
H H YY T + R E++ P+ VT++ LS S
Sbjct: 520 HTHVYYTTAEPRSEISVQPVTVTQDTLSCQS 550
>BC068470-1|AAH68470.1| 711|Homo sapiens mitogen-activated protein
kinase 8 interacting protein 1 protein.
Length = 711
Score = 29.5 bits (63), Expect = 7.2
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +1
Query: 172 VSPRTQPPPEIPDGPSHKHAHNYYYTRDARREVAPPIDVT 291
++P PP P G H H +Y D R E I +T
Sbjct: 245 MAPPGGPPAATPGGRGHSHRDRIHYQADVRLEATEEIYLT 284
>AY395768-1|AAR21239.1| 651|Homo sapiens patched protein.
Length = 651
Score = 29.5 bits (63), Expect = 7.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 226 HAHNYYYTRDARREVA-PPIDVTKELLSASS 315
H H YY T + R E++ P+ VT++ LS S
Sbjct: 266 HTHVYYTTAEPRSEISVQPVTVTQDTLSCQS 296
>AL161729-2|CAH73818.1| 1296|Homo sapiens patched homolog 1
(Drosophila) protein.
Length = 1296
Score = 29.5 bits (63), Expect = 7.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 226 HAHNYYYTRDARREVA-PPIDVTKELLSASS 315
H H YY T + R E++ P+ VT++ LS S
Sbjct: 520 HTHVYYTTAEPRSEISVQPVTVTQDTLSCQS 550
>AL161729-1|CAH73817.1| 1447|Homo sapiens patched homolog 1
(Drosophila) protein.
Length = 1447
Score = 29.5 bits (63), Expect = 7.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 226 HAHNYYYTRDARREVA-PPIDVTKELLSASS 315
H H YY T + R E++ P+ VT++ LS S
Sbjct: 671 HTHVYYTTAEPRSEISVQPVTVTQDTLSCQS 701
>AB209495-1|BAD92732.1| 586|Homo sapiens patched variant protein.
Length = 586
Score = 29.5 bits (63), Expect = 7.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 226 HAHNYYYTRDARREVA-PPIDVTKELLSASS 315
H H YY T + R E++ P+ VT++ LS S
Sbjct: 107 HTHVYYTTAEPRSEISVQPVTVTQDTLSCQS 137
>BC047597-1|AAH47597.1| 317|Homo sapiens C10orf73 protein protein.
Length = 317
Score = 29.1 bits (62), Expect = 9.5
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Frame = +1
Query: 178 PRTQPPPEIPDGPSHKH-AHNYY----YTRDARREVAPPIDVTKELLSASS 315
P QP P + + P H+H H++ Y D R E +P T L S S
Sbjct: 11 PSVQPQPTLTEQPEHRHPGHSFQIMKCYFTDHRGEQSPTDGTTLSLTSPES 61
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,633,813
Number of Sequences: 237096
Number of extensions: 1642325
Number of successful extensions: 4577
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 4276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4545
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4820001670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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