Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_M14
(606 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 162 3e-41
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce... 83 2e-17
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 51 1e-07
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 45 8e-06
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 30 0.30
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 29 0.70
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 28 1.2
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 27 1.6
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 26 3.7
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 26 3.7
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 6.5
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 6.5
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 25 8.6
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 25 8.6
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe... 25 8.6
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 162 bits (394), Expect = 3e-41
Identities = 73/159 (45%), Positives = 105/159 (66%)
Frame = +3
Query: 123 QHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCW 302
Q +F+PY NGG+ VAIAGD +A++ DTR G++I TR Q ++ ++ + V+GA+G
Sbjct: 3 QSQFDPYVQNGGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFE 62
Query: 303 CDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGK 482
D L L + +Q R+ +Y H + M+ + A M+ T+LY KRFFPYYV +AG+D +GK
Sbjct: 63 ADALALVKRIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKEGK 122
Query: 483 GCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKN 599
G +YS+DP+G R RAGGSAA + P LDNQ+ L N
Sbjct: 123 GEIYSFDPVGSYEREWCRAGGSAANFITPFLDNQVNLHN 161
>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 204
Score = 83.4 bits (197), Expect = 2e-17
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 2/146 (1%)
Frame = +3
Query: 150 NGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRL 329
NGGS VA+AG + I +D RL T + K+F + + T LG TG D TL L
Sbjct: 7 NGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDVQTLYEL 66
Query: 330 LQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPI 509
+ ++ +Y+ + + A ++S+ LY KRF PY+ V+AG+ +D + +D I
Sbjct: 67 FRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNTPFICGFDSI 126
Query: 510 GHCA--RHNFRAGGSAAAQLQPLLDN 581
G C +F G+A QL + ++
Sbjct: 127 G-CIDFAEDFIVSGTATEQLYGMCES 151
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 51.2 bits (117), Expect = 1e-07
Identities = 38/142 (26%), Positives = 61/142 (42%)
Frame = +3
Query: 153 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 332
G +I A+ D ++ AD+R + G I R KL +L+++ +G DT T+ LL
Sbjct: 24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLL 83
Query: 333 QARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 512
+ + MY + + A + S M Y + ++AG D G VYS G
Sbjct: 84 KYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNM-LSAGLIVAGYDEKTGGDVYSIPLGG 142
Query: 513 HCARHNFRAGGSAAAQLQPLLD 578
+ GGS +A + D
Sbjct: 143 SLHKQPLAIGGSGSAFIYGFCD 164
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 45.2 bits (102), Expect = 8e-06
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Frame = +3
Query: 153 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 332
G +IV + D V+GADTR + G I ++ KKL +S + G DT +T ++
Sbjct: 35 GTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTSMI 94
Query: 333 QARMQMYE-HEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDG 479
+ ++++ + + K A+ + + Y+ Y+ VL G D G
Sbjct: 95 SSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGHIGAYL--VLGGYDCKG 142
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 29.9 bits (64), Expect = 0.30
Identities = 26/147 (17%), Positives = 57/147 (38%), Gaps = 4/147 (2%)
Frame = +3
Query: 147 DNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTR 326
++ G + I D V+ A+ ++++ +KL+ + ++ + G D L
Sbjct: 29 NHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILIN 88
Query: 327 LLQARMQMYEHEHNKSMTTPAVAQMLSTM----LYYKRFFPYYVSNVLAGLDSDGKGCVY 494
+ Q Y N+ M + + + + Y P+ VS + AG D ++
Sbjct: 89 YARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYTQYGGLRPFGVSFLYAGWDHIRGYQLF 148
Query: 495 SYDPIGHCARHNFRAGGSAAAQLQPLL 575
+P G+ + G + +Q L+
Sbjct: 149 QSNPSGNYGSWQANSIGGNSTSVQSLM 175
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 28.7 bits (61), Expect = 0.70
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 372 ICYARVRTSASSLVEDASRLMCHTSSQSLPILY 274
+CY+ T++ L+E + H + SLPI+Y
Sbjct: 828 VCYSSFLTASPRLMEPVYMVEVHAPADSLPIIY 860
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 78 SVNENFPEYAVPGAKQHRFEPYADNGGSIVAIAGD-DYAVIGADT 209
S N F P K ++ +GG+ AIA D YA +G+DT
Sbjct: 118 SENNLFGRTVNPVVKDSNYDVGGSSGGAAAAIAADICYASVGSDT 162
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 343 CRCTNTSITNL*PLRQSHRCSQLCCI 420
CRCT T N+ L Q + + +CCI
Sbjct: 743 CRCTPTQKANMTRLIQEKKQASVCCI 768
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 245 VSGIYGKSSAETSVCSDNGIIIAGDGYN 162
V G G ++E VCSD G+ + DG N
Sbjct: 77 VRGRRGAVASEVPVCSDIGVSMLADGGN 104
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 168 AIAGDDYAVIGADTRLSTGFSI 233
AI GD Y+ IG++ GFSI
Sbjct: 321 AIVGDTYSTIGSNVEALPGFSI 342
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 498 YDPIGHCARHNFRAGGSAAAQLQPLLDN 581
Y+P+ + A H FR G S + L+ + N
Sbjct: 332 YEPLFNTASHGFRPGRSCHSALRSIFTN 359
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 339 RMQMYEHEHNKSMTTPAVAQMLSTMLYYKR 428
R Q ++NK M T A M TM+++KR
Sbjct: 666 RWQFRTIKNNKDMQTKAKRAMRETMVFWKR 695
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 453 VLAGLDSDGKGCVYSY 500
VL G D DG+ C+Y Y
Sbjct: 686 VLLGYDKDGRPCLYLY 701
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/62 (22%), Positives = 27/62 (43%)
Frame = +3
Query: 96 PEYAVPGAKQHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSES 275
P A+P + D + I GDD + ++T S+Y+ + K+F+ ++
Sbjct: 346 PLQALPPLPLEKLYGSQDGFETAKKIVGDDLFKAFVPSAVTTASSLYSEETAKVFRAEQA 405
Query: 276 TV 281
V
Sbjct: 406 EV 407
>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 377
Score = 25.0 bits (52), Expect = 8.6
Identities = 21/73 (28%), Positives = 29/73 (39%)
Frame = +3
Query: 348 MYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIGHCARH 527
++ E S TPAV + + P VS VL G+DS + V P+ R
Sbjct: 105 LFGREKQNSEATPAVQPPATCPMSNSNQKPAGVSEVLTGVDSKQQSYVPEGCPVATPKRG 164
Query: 528 NFRAGGSAAAQLQ 566
F G+ Q Q
Sbjct: 165 WFNWFGNNDDQKQ 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,673
Number of Sequences: 5004
Number of extensions: 54751
Number of successful extensions: 183
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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