Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_M14
(606 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 142 1e-34
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 142 1e-34
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 82 3e-16
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 59 3e-09
Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical pr... 46 3e-05
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 45 5e-05
Z73423-1|CAA97776.2| 492|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z77662-7|CAB01197.1| 349|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z68748-12|CAN86588.1| 792|Caenorhabditis elegans Hypothetical p... 28 5.9
Z68748-10|CAL36500.1| 789|Caenorhabditis elegans Hypothetical p... 28 5.9
Z68748-9|CAL36499.1| 796|Caenorhabditis elegans Hypothetical pr... 28 5.9
U50313-5|AAA92329.1| 270|Caenorhabditis elegans Palmitoyl prote... 27 7.9
AY691522-1|AAU01161.1| 254|Caenorhabditis elegans palmitoyl pro... 27 7.9
AC024859-27|AAK29978.4| 337|Caenorhabditis elegans Hypothetical... 27 7.9
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 142 bits (345), Expect = 1e-34
Identities = 65/158 (41%), Positives = 103/158 (65%), Gaps = 1/158 (0%)
Frame = +3
Query: 120 KQHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTG-FSIYTRDQKKLFKLSESTVLGATG 296
++ R+ PY+ GGS AI+G+++A++ +DTR++ +I TRD +K+ L+++ +L +G
Sbjct: 40 ERQRWNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSG 99
Query: 297 CWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSD 476
+ D L L ++LQ+R+ Y ++ M+ A++LS LYY+RFFPYY +LAG+D
Sbjct: 100 FYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH 159
Query: 477 GKGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQIG 590
GKG V+SYDPIG R + A G+A + P LD QIG
Sbjct: 160 GKGAVFSYDPIGCIERLGYSASGAAEPMIIPFLDCQIG 197
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 142 bits (345), Expect = 1e-34
Identities = 65/158 (41%), Positives = 103/158 (65%), Gaps = 1/158 (0%)
Frame = +3
Query: 120 KQHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTG-FSIYTRDQKKLFKLSESTVLGATG 296
++ R+ PY+ GGS AI+G+++A++ +DTR++ +I TRD +K+ L+++ +L +G
Sbjct: 40 ERQRWNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSG 99
Query: 297 CWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSD 476
+ D L L ++LQ+R+ Y ++ M+ A++LS LYY+RFFPYY +LAG+D
Sbjct: 100 FYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH 159
Query: 477 GKGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQIG 590
GKG V+SYDPIG R + A G+A + P LD QIG
Sbjct: 160 GKGAVFSYDPIGCIERLGYSASGAAEPMIIPFLDCQIG 197
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 81.8 bits (193), Expect = 3e-16
Identities = 43/144 (29%), Positives = 74/144 (51%), Gaps = 1/144 (0%)
Frame = +3
Query: 153 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 332
GG++VA+AGD+ I +D R+ + DQKK+ K+++ +G G D T+ +
Sbjct: 8 GGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKI 67
Query: 333 QARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 512
R +YE N+++ +++M+S + Y RF Y+ ++AGLD K + D IG
Sbjct: 68 MFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTIG 127
Query: 513 -HCARHNFRAGGSAAAQLQPLLDN 581
A +F A G+ L + +N
Sbjct: 128 CVSAPRDFVAVGTGQEYLLGVCEN 151
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 58.8 bits (136), Expect = 3e-09
Identities = 39/144 (27%), Positives = 70/144 (48%)
Frame = +3
Query: 153 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 332
G +++A+ + V+G D+R S G I +R K+ ++++ V+ +G DT + +
Sbjct: 23 GTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIADIA 82
Query: 333 QARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 512
+ + +Y NK +T +Q+ LY R S ++AG D + G VY+ G
Sbjct: 83 KYHIDVYTMTENKPVTIYRSSQIFRQFLYNYR-EQLSASVLVAGWDEELGGQVYAIPIGG 141
Query: 513 HCARHNFRAGGSAAAQLQPLLDNQ 584
+R A GS + +Q LD+Q
Sbjct: 142 FVSRQRSTASGSGSTFVQGFLDSQ 165
>Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical
protein C47B2.4 protein.
Length = 277
Score = 45.6 bits (103), Expect = 3e-05
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
Frame = +3
Query: 153 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 332
G +IVA+A V+GAD+R + G I + +K+ KL+ES G D +T++L
Sbjct: 46 GTTIVAVAFKGGLVMGADSRATAGNIIADKHCEKVHKLTESIYACGAGTAADLDQVTKML 105
Query: 333 QARMQMYE-HEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPI 509
+++ E + K+ A+ Q + Y+ + Y+ ++ G+D G +Y
Sbjct: 106 SGNLRLLELNTGRKARVITALRQAKQHLFNYQGYIGAYL--LIGGVDPTGPH-LYMCSAN 162
Query: 510 GHCARHNFRAGGSAA 554
G F A GS +
Sbjct: 163 GTTMAFPFTAQGSGS 177
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 44.8 bits (101), Expect = 5e-05
Identities = 31/130 (23%), Positives = 56/130 (43%)
Frame = +3
Query: 192 VIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNK 371
++ D+R S+G I ++ K+ + + V G D TR++ +YE
Sbjct: 84 IVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREKT 143
Query: 372 SMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIGHCARHNFRAGGSA 551
S+T A ++ + LY R V +++AG D G ++ D G + + GS
Sbjct: 144 SITVSAASKYFANTLYGYRGQGLSVGSMVAGYDKKGPQ-IFKVDSEGDRCQLKVCSVGSG 202
Query: 552 AAQLQPLLDN 581
+ +LDN
Sbjct: 203 SLNAYGILDN 212
>Z73423-1|CAA97776.2| 492|Caenorhabditis elegans Hypothetical
protein C03A3.2 protein.
Length = 492
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = -3
Query: 556 AAAEPPARKLWRAQCPIGS*LYT----HPLPSLSKPANTLDT*YGKNRL*YNIV 407
AAA PPA G +Y H +PSL P T D +GK L Y +V
Sbjct: 229 AAAHPPAYNFHGFGSLFGCAVYAFMCHHSIPSLITPMRTKDNVFGKIALVYGVV 282
>Z77662-7|CAB01197.1| 349|Caenorhabditis elegans Hypothetical
protein F47B8.7 protein.
Length = 349
Score = 28.3 bits (60), Expect = 4.5
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Frame = -3
Query: 409 VESICATAGVVIDLLCSCSYICILACRRRVKVNVSHQQPVAPNT-VLSDNLN-----SFF 248
V SI + V+ L+ S + ++ C ++ + V + + N VL +N FF
Sbjct: 218 VGSIMSAVAYVLTLILSI--LVMILCTIKINLKVRESKNSSNNLLVLQKKMNRVLLAQFF 275
Query: 247 WSLVYMENPVLRRVSAPITA*SSPAMATILPPLSA 143
L++++ P V PI S + +LP L A
Sbjct: 276 CPLIFIQAPFYYSVLGPIVGLSQGLVTDLLPLLFA 310
>Z68748-12|CAN86588.1| 792|Caenorhabditis elegans Hypothetical
protein F13H10.4c protein.
Length = 792
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 234 YTRDQKKLFKLSESTVLGATGCW 302
YT+ Q K+ K+S S +LG+ G W
Sbjct: 337 YTKTQLKMAKVSLSNMLGSVGYW 359
>Z68748-10|CAL36500.1| 789|Caenorhabditis elegans Hypothetical
protein F13H10.4b protein.
Length = 789
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 234 YTRDQKKLFKLSESTVLGATGCW 302
YT+ Q K+ K+S S +LG+ G W
Sbjct: 334 YTKTQLKMAKVSLSNMLGSVGYW 356
>Z68748-9|CAL36499.1| 796|Caenorhabditis elegans Hypothetical
protein F13H10.4a protein.
Length = 796
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 234 YTRDQKKLFKLSESTVLGATGCW 302
YT+ Q K+ K+S S +LG+ G W
Sbjct: 341 YTKTQLKMAKVSLSNMLGSVGYW 363
>U50313-5|AAA92329.1| 270|Caenorhabditis elegans Palmitoyl protein
thioesteraseprotein 1 protein.
Length = 270
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 537 RGSYGAHSVR*GRNYIHIPYRRCPNPPTRWIRSMG 433
+ Y A G ++ +RCPNPP + + S+G
Sbjct: 70 KNGYNAIGFSQGAQFLRAVAQRCPNPPMKNLVSVG 104
>AY691522-1|AAU01161.1| 254|Caenorhabditis elegans palmitoyl
protein thioesterase protein.
Length = 254
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 537 RGSYGAHSVR*GRNYIHIPYRRCPNPPTRWIRSMG 433
+ Y A G ++ +RCPNPP + + S+G
Sbjct: 70 KNGYNAIGFSQGAQFLRAVAQRCPNPPMKNLVSVG 104
>AC024859-27|AAK29978.4| 337|Caenorhabditis elegans Hypothetical
protein Y71H2AM.1 protein.
Length = 337
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 372 ICYARVRTSASSLVEDASRLMCHTSSQSLPIL 277
+C++ T + L+E R M HTSS+ L I+
Sbjct: 231 LCFSLQETVFAMLIEITERAMAHTSSKELLIV 262
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,638,572
Number of Sequences: 27780
Number of extensions: 314526
Number of successful extensions: 1026
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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