Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_M12
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 249 2e-67
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 248 5e-67
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 248 7e-67
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 27 1.8
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c... 27 2.4
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 3.1
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.1
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 4.1
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 7.2
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 7.2
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 9.5
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 249 bits (610), Expect = 2e-67
Identities = 118/182 (64%), Positives = 136/182 (74%)
Frame = +3
Query: 72 PKHGCWTNLAVCMHRDRQPVPTSCASACPWXIFLRNRLKYALTGNEVLKIVKQRLIKVDG 251
P H L+ P P P +FLRNRLKYAL G EV I+ QRLIKVDG
Sbjct: 15 PHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDG 74
Query: 252 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
KVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K
Sbjct: 75 KVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAK 134
Query: 432 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 611
VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN+GRVGT
Sbjct: 135 GVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGT 194
Query: 612 IV 617
IV
Sbjct: 195 IV 196
Score = 71.7 bits (168), Expect = 8e-14
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = +2
Query: 44 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLXDF 169
KKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL F
Sbjct: 6 KKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVF 47
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 248 bits (607), Expect = 5e-67
Identities = 117/182 (64%), Positives = 136/182 (74%)
Frame = +3
Query: 72 PKHGCWTNLAVCMHRDRQPVPTSCASACPWXIFLRNRLKYALTGNEVLKIVKQRLIKVDG 251
P H L+ P P P +FLRNRLKYAL G EV I+ QRLIKVDG
Sbjct: 15 PHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDG 74
Query: 252 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
KVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K
Sbjct: 75 KVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAK 134
Query: 432 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 611
VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN+GRVGT
Sbjct: 135 GVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGT 194
Query: 612 IV 617
IV
Sbjct: 195 IV 196
Score = 71.7 bits (168), Expect = 8e-14
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = +2
Query: 44 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLXDF 169
KKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL F
Sbjct: 6 KKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVF 47
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 248 bits (606), Expect = 7e-67
Identities = 117/182 (64%), Positives = 136/182 (74%)
Frame = +3
Query: 72 PKHGCWTNLAVCMHRDRQPVPTSCASACPWXIFLRNRLKYALTGNEVLKIVKQRLIKVDG 251
P H L+ P P P +FLRNRLKYAL G EV I+ QRLI+VDG
Sbjct: 15 PHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVDG 74
Query: 252 KVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPK 431
KVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K
Sbjct: 75 KVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAK 134
Query: 432 NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 611
VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN+GRVGT
Sbjct: 135 GVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGT 194
Query: 612 IV 617
IV
Sbjct: 195 IV 196
Score = 71.7 bits (168), Expect = 8e-14
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = +2
Query: 44 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLXDF 169
KKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL F
Sbjct: 6 KKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVF 47
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +3
Query: 225 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 404
K++ K+ +R + +P + +I + F + G + +I K LC
Sbjct: 13 KRKFDKLRNVIRFEMPFPVWCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCS 72
Query: 405 VK-RVATGPKNVPYLVTHDGR 464
V T PKN Y+V GR
Sbjct: 73 NPIDVHTDPKNTEYIVASGGR 93
>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 27.1 bits (57), Expect = 2.4
Identities = 27/98 (27%), Positives = 48/98 (48%)
Frame = -1
Query: 338 ID*TKQFISLLN*DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENXP 159
ID +QF+ L+ S+ R + + IN Y LFH+ + G+S+ +T +E
Sbjct: 55 IDSLRQFVQQLSVRQ--NMSKDRREALTYFINSYNDLFHDVY-YGDGRSMSKT--EE--- 106
Query: 158 GASTRATCGDRLTVSVHTHRQVCPTSMLWERLSASNAS 45
A T T T+ + ++ P+ + W+RLS + A+
Sbjct: 107 -AQTIVT----FTIGSYLYKYTHPSELFWQRLSDNMAN 139
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 491 QSQRFHPVRHCNYED 535
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 291 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 467
+V S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 468 IR 473
++
Sbjct: 1778 LK 1779
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 458 WPHHPLPRPTYQSQR 502
WPHH LP + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +2
Query: 461 PHHPLPRPTYQSQRFHPVRHCNYEDY 538
PH+ P + Q+ HPV+ N+ Y
Sbjct: 265 PHNSFPASADRLQKNHPVQSSNFNPY 290
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 386 SLLRGDTVDCESALNIID*TKQ 321
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 203 SGQSILQTIPQENXPGASTRATCGDRLTVS 114
SG +Q IPQ+ P +S+ DR T+S
Sbjct: 70 SGSVKVQEIPQDQLPKSSSDNAVTDRKTIS 99
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 464 HHPLPRPTYQSQRFHPVR 517
H PLPRP Q + PVR
Sbjct: 720 HKPLPRPPVQVETREPVR 737
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,764,377
Number of Sequences: 5004
Number of extensions: 57664
Number of successful extensions: 156
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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